BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000054.1_g0340.1
(422 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 93 4e-20
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 87 4e-18
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 66 1e-11
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 64 9e-11
AT2G22440.1 | non-LTR retroelement reverse transcriptase | Chr2:... 57 6e-09
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 169/403 (41%), Gaps = 49/403 (12%)
Query: 8 LEPGRCMSIGNGVNTKIWEDPWVPTLKGFRPGKNEE---EVEIPNLYTVKELIDQDTKKW 64
L+ G IG+G N +I D V + RP EE E+ I NL+ K W
Sbjct: 34 LKKGTRHLIGDGQNIRIGLDNIVDSHPP-RPLNTEETYKEMTINNLFERK----GSYYFW 88
Query: 65 NQNLIHRVFDRISARGILKIQLGNSASEDILIWTFTEKGNFMAKSLYKSITSQQ----PS 120
+ + I + D+ I +I L S D +IW + G + +S Y +T P+
Sbjct: 89 DDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPA 148
Query: 121 SSNSNTSIIADLKWQRLWKNFEVIPRVKMFIWRVLNDAIPTKLK-ALRFNHIEVKLCPIC 179
+ + SI DLK R+W N ++P++K F+WR L+ A+ T + R I+ CP C
Sbjct: 149 INPPHGSI--DLK-TRIW-NLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS-CPRC 203
Query: 180 EDFDEDINHIFKDCHFAKEIWF--------RFLLGYRFEENHTIEDKIKEWIDHKGEDEG 231
+E INH C FA W L+ FEEN I + + D D
Sbjct: 204 HRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEEN--ISNILNFVQDTTMSDFH 261
Query: 232 VKMSACLIWAIWKARNKKIFGNVKPDVMKTIKEAVELFMIYEKHIKKEEDLNNTHTYSHV 291
+ LIW IWKARN +F + KT+ A E H + LN T ++
Sbjct: 262 KLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKA-----ETH----DWLNATQSHKKT 312
Query: 292 QRARRV---------TLMLDEVRINVDGSF--KNGDGASAVVIRSYDNTFVAAES-EFYN 339
R V+ N D F + + +IR++ T ++ S + +
Sbjct: 313 PSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH 372
Query: 340 AGNALETQAKSVLMGLKLARKLLHRRVVIEEDSSTIIQVLKRI 382
N LE + K++L L+ + +V +E D T+I ++ I
Sbjct: 373 TSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI 415
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/394 (20%), Positives = 176/394 (44%), Gaps = 30/394 (7%)
Query: 8 LEPGRCMSIGNGVNTKIWEDPWV---PTLKGFRPGK--NEEEVEIPNLYTVKELIDQDTK 62
L G +GNG + IW W+ P R + +E + ++ V +LID+ +
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 63 KWNQNLIHRVFDRISARGILKIQLGNSASEDILIWTFTEKGNFMAKSLYKSITS--QQPS 120
+W +++I +F + + I +++ G D W +T G++ KS Y +T + S
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 121 SSNSNTSIIADLKWQRLWKNFEVIPRVKMFIWRVLNDAIPTKLKALRFNHIEVK-LCPIC 179
S + + +Q++WK+ + P+++ F+W+ L++++P AL + H+ + C C
Sbjct: 241 SPQEVSEPSLNPIYQKIWKS-QTSPKIQHFLWKCLSNSLPVA-GALAYRHLSKESACIRC 298
Query: 180 EDFDEDINHIFKDCHFAKEIW----FRFLLGYRFEENHTIEDKIKEWIDHKGE-----DE 230
E +NH+ C FA+ W LG + ++ + W+ + G ++
Sbjct: 299 PSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVN---LYWVFNLGNGNPQWEK 355
Query: 231 GVKMSACLIWAIWKARNKKIFGNVKPDVMKTIKEAVELFMIYEKHIKKEEDLNNTHTYSH 290
++ L+W +WK RN+ +F + + + ++ A + + E I+ E + T +
Sbjct: 356 ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED--DLEEWRIRTEAESCGTKPQVN 413
Query: 291 VQRARRVTLMLDE-VRINVDGSFKNGDGASAV--VIRSYDN--TFVAAESEFYNAGNALE 345
R + V+ N D ++ + + V+R+ ++ A + + LE
Sbjct: 414 RSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLE 472
Query: 346 TQAKSVLMGLKLARKLLHRRVVIEEDSSTIIQVL 379
+ +++ + + + V+ E DS +I++L
Sbjct: 473 AELEAMRWAVLSLSRFQYNYVIFESDSQVLIEIL 506
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 127/261 (48%), Gaps = 22/261 (8%)
Query: 136 RLWKNFEVIPRVKMFIWRVLNDAIPT----KLKALRFNHIEVKLCPICEDFDEDINHIFK 191
++WK + P++K F+W++L+ A+ T K + +R NH + C C++ DE H+F
Sbjct: 17 KIWK-LKTAPKIKHFLWKLLSGALATGDNLKRRHIR-NHPQCHRC--CQE-DETSQHLFF 71
Query: 192 DCHFAKEIWFRFLLGYR--FEENHTIEDKIKEWIDH---KGEDEGVKMSACLIWAIWKAR 246
DC +A+++W + ++ T+E K++ + + + ++ ++W +WK+R
Sbjct: 72 DCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSR 131
Query: 247 NKKIFGNVKPDVMKTIKEAVELFMIYEKHIKKEEDLN-NTHTYSHVQ----RARRVTLML 301
N+ +F T++ A +E + LN H+ H Q R +
Sbjct: 132 NQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPS 191
Query: 302 DEVRINVDGSF--KNGDGASAVVIRSYDNTFVAAESEF-YNAGNALETQAKSVLMGLKLA 358
++ N DG+F + + + ++R + ++ + ++LE++ +++++ ++ A
Sbjct: 192 TWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHA 251
Query: 359 RKLLHRRVVIEEDSSTIIQVL 379
+R+V+ E DS + +++
Sbjct: 252 WSQGYRKVIFEGDSKQVEELM 272
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 135 QRLWKNFEVIPRVKMFIWRVLNDAIPTKLKALRFNHIEV-KLCPICEDFDEDINHIFKDC 193
Q +WK V P++K F+WR + A+ T + LR +I+ +C C +E I+HI +C
Sbjct: 35 QAIWK-LHVAPKIKHFLWRCVTGALATNTR-LRSRNIDADPICQRCCIEEETIHHIMFNC 92
Query: 194 HFAKEIW--FRFLLGYRFEENHTIEDKIKEWIDHKGEDEGVKMSACL----IWAIWKARN 247
+ + +W ++G ++ + ED + I + L +W +WK+RN
Sbjct: 93 PYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRN 152
Query: 248 KKIFGN--VKPD--VMKTIKEAVELFMIYEKHIKKEEDLNNTHTYSHVQRARRVTLMLDE 303
+F PD K I++A E E E+ N + +Q +RR + +
Sbjct: 153 VFLFQQKCQSPDYEARKGIQDATEWLNANE----TTENTNVHVATNPIQTSRRDSSQWNP 208
Query: 304 -----VRINVDGSFKNGDGA--SAVVIRSYDNTFV-AAESEFYNAGNALETQAKSVLMGL 355
V+ N D + G S IR + V ++ ++ +L +A L L
Sbjct: 209 PPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHAL 268
Query: 356 KLARKLLHRRVVIEEDSSTIIQVLKRIMVR-LLGKLETYSRIFKVKH 401
++ R V E DS +++ ++ LLG L I+ ++H
Sbjct: 269 QVIWAHGLRYVWFESDSKSLVTLINNGEDHSLLGTL-----IYDIRH 310
>AT2G22440.1 | non-LTR retroelement reverse transcriptase |
Chr2:9528910-9529917 FORWARD LENGTH=256 | 201606
Length = 256
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 22 TKIWEDPWVPTLKGFRPGKNEEEVEIPNLYTVKELIDQDTKKWNQNLIHRVFDRISARGI 81
T++W+DPW+PT+ RP K+ + LY V +LIDQ+T W + + + D + I
Sbjct: 3 TRVWKDPWIPTILA-RPAKSILNIRDSLLY-VNDLIDQNTNLWKLDRLQALIDPVDIPLI 60
Query: 82 LKIQLGNSASEDILIWTFTEKGNFMAKSLY 111
L I+ + D W+ T+ GN+ KS Y
Sbjct: 61 LGIRPSRTYLSDGFSWSHTKSGNYTVKSGY 90