BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0020.1
(193 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61340.2 | F-box family protein | Chr1:22628526-22629741 FORW... 90 2e-22
AT1G61340.1 | F-box family protein | Chr1:22628526-22629741 FORW... 90 2e-22
AT4G05010.1 | F-box family protein | Chr4:2567474-2568162 FORWAR... 75 5e-17
AT4G21510.1 | F-box family protein | Chr4:11446193-11447025 REVE... 74 3e-16
AT4G35930.2 | F-box family protein | Chr4:17019482-17020465 FORW... 59 2e-10
>AT1G61340.2 | F-box family protein | Chr1:22628526-22629741 FORWARD
LENGTH=185 | 201606
Length = 185
Score = 89.7 bits (221), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 103/186 (55%), Gaps = 11/186 (5%)
Query: 1 MALGKRSI----KRAYSLNDSTLKALNEGSEFVNCTRTLRRKRVSVSNLSEMDALDFNSP 56
MALGK+ I D L G EFV R RKR+ +S+ EM+ F SP
Sbjct: 1 MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60
Query: 57 M-KINSKKRNISQVDSKNISLDSLPQDILVKILCFVDHDDLDKLLCVSMPIKEATLIAKQ 115
+ K + S + ++ L+ LP DILV+I+C V+H+DL +L VS I+EAT+IAKQ
Sbjct: 61 VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQ 120
Query: 116 WHFEFSTPNSKTC---GVKNFNE-FEDDPRRFNMETPNAPIREQGFCRRQISREK-LAEI 170
HF +STP + G +++ F+ + +E P AP++++ + +I+R K + +
Sbjct: 121 SHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKR-YRLSRINRNKDDSGV 179
Query: 171 TISLFH 176
+++LFH
Sbjct: 180 SVALFH 185
>AT1G61340.1 | F-box family protein | Chr1:22628526-22629741 FORWARD
LENGTH=185 | 201606
Length = 185
Score = 89.7 bits (221), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 103/186 (55%), Gaps = 11/186 (5%)
Query: 1 MALGKRSI----KRAYSLNDSTLKALNEGSEFVNCTRTLRRKRVSVSNLSEMDALDFNSP 56
MALGK+ I D L G EFV R RKR+ +S+ EM+ F SP
Sbjct: 1 MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60
Query: 57 M-KINSKKRNISQVDSKNISLDSLPQDILVKILCFVDHDDLDKLLCVSMPIKEATLIAKQ 115
+ K + S + ++ L+ LP DILV+I+C V+H+DL +L VS I+EAT+IAKQ
Sbjct: 61 VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQ 120
Query: 116 WHFEFSTPNSKTC---GVKNFNE-FEDDPRRFNMETPNAPIREQGFCRRQISREK-LAEI 170
HF +STP + G +++ F+ + +E P AP++++ + +I+R K + +
Sbjct: 121 SHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKR-YRLSRINRNKDDSGV 179
Query: 171 TISLFH 176
+++LFH
Sbjct: 180 SVALFH 185
>AT4G05010.1 | F-box family protein | Chr4:2567474-2568162 FORWARD
LENGTH=164 | 201606
Length = 164
Score = 75.1 bits (183), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 25/160 (15%)
Query: 25 GSEFVNCTRTLRRKRVSVSNLSEMDALDFNSPMKINSKKRNISQVDSKNISLDSLPQDIL 84
G FV TR L RKR+ +S A + +SP K+ + +S L++L QDIL
Sbjct: 20 GLGFVRFTRGLGRKRILISK----RAPENDSP---PVKRPSHETTESCRSLLETLHQDIL 72
Query: 85 VKILCFVDHDDLDKLLCVSMPIKEATLIAKQWHFEFSTPNSK--------TCGVKNFNEF 136
+++LC VDH+DL L VS I++A + AK+ HF++STP + + +
Sbjct: 73 IRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNSSS 132
Query: 137 EDDPRRFNMETPNAPIREQGFCRRQISREK-LAEITISLF 175
+DD ME PNAPIR RR I+RE L++I++ LF
Sbjct: 133 QDD----EMEPPNAPIR-----RRFINRESDLSKISMVLF 163
>AT4G21510.1 | F-box family protein | Chr4:11446193-11447025 REVERSE
LENGTH=225 | 201606
Length = 225
Score = 74.3 bits (181), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 23/166 (13%)
Query: 29 VNCTRTLRRKRVSVSN-----LS----EMDALDFNSPMKINSKKRNISQVD------SKN 73
V TR L RKR+ +S+ LS E+ + + P+K +S KR S++ S+
Sbjct: 63 VRFTRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVK-SSLKRQRSRITIVSSSSSEK 121
Query: 74 ISLDSLPQDILVKILCFVDHDDLDKLLCVSMPIKEATLIAKQWHFEFSTPNSKTCGVKNF 133
L+ LPQD+L++++C VDH+DL L VS I+EA+L+AK HF ++TP KT +N
Sbjct: 122 SRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPK-KTRAFRNS 180
Query: 134 NEFED--DPRRF--NMETPNAPIREQGFCRRQISREKLAEITISLF 175
+ E+ D R ++E PNAP R + + + +E+L+ ++ +LF
Sbjct: 181 IDLEEVSDSRHQEDDIEPPNAP-RHYRWTKAK-RKEQLSSVSAALF 224
>AT4G35930.2 | F-box family protein | Chr4:17019482-17020465 FORWARD
LENGTH=259 | 201606
Length = 259
Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 76 LDSLPQDILVKILCFVDHDDLDKLLCVSMPIKEATLIAKQWHFEFSTPN 124
L+SLP D+LVKI+C + HD L + VS I+ AT++A+Q+HF ++TP+
Sbjct: 162 LESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPD 210