BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000058.1_g0040.1
         (445 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67930.1 | Golgi transport complex protein-like protein | Chr...   287   2e-88

>AT1G67930.1 | Golgi transport complex protein-like protein |
           Chr1:25474218-25477332 REVERSE LENGTH=832 | 201606
          Length = 832

 Score =  287 bits (734), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/277 (55%), Positives = 208/277 (75%), Gaps = 7/277 (2%)

Query: 104 NKLRSEVLSRQDDLLSLLFSIKDAESALSVVRSGSSTLQSSVRGIRQEIADSHHQIRFKT 163
           ++LR++V+SR  +LL+ L S+  A+ +LS +RS  S+LQSS+R +R ++++    IR K+
Sbjct: 95  SQLRNDVISRHPELLAQLSSLSHADVSLSSLRSSVSSLQSSIRRVRSDLSEPIKSIRSKS 154

Query: 164 VQLSNIHQTTELLQFTVRVLRLSKILRDLMAIGGSEPEKMNLSKAAQLYHEIQCLCEEKS 223
           VQLSN+H  TELL  +VR LRLSK LRDL      +P+K++L+KAAQ + EI  +C+E  
Sbjct: 155 VQLSNLHTATELLSHSVRTLRLSKKLRDLADF--PDPDKIDLTKAAQFHFEILTMCKEYD 212

Query: 224 LSGITVIDEELVWLSKTGNKIRLEGMKVLERGMEGLNQAEVGSGLQVFYNLGELRLTVDT 283
           L GI VIDEE+ ++++ G K+R E MKVLERGMEGLNQAEVG+GLQVFYNLGEL+ TVD 
Sbjct: 213 LFGIDVIDEEIKFVTEIGEKLRSEAMKVLERGMEGLNQAEVGTGLQVFYNLGELKSTVDQ 272

Query: 284 LINKYKNQCIKCISFALDMKAISASGVSFGPRGILRST-----GGGAKAKEGLWHRMHTC 338
           L+NKYK   +K +S A+DMKAI++        G +RS+     GGGAK +E LW RM +C
Sbjct: 273 LVNKYKGMAVKSVSVAMDMKAITSGSGGGFGPGGIRSSGSPHIGGGAKVREALWQRMASC 332

Query: 339 MNQIHSIVVAIWHLQRVLSKKRDPFTHVLLLDKVMQE 375
           M Q+ S+VVA+WHLQRVLSKKRDPFTHVLLLD+V++E
Sbjct: 333 MEQLCSLVVAVWHLQRVLSKKRDPFTHVLLLDEVIKE 369



 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 373 MQEEIEAVELDEHLTMLVLREIGKVLHLLAERAEYQISMGPDALQVTGPATQSQLQQL 430
           +Q+EIEAV  D  LT+LVLREIGK L  LA+RAE QIS GP+  Q++GPAT +Q++  
Sbjct: 491 IQDEIEAVHPDARLTLLVLREIGKALSNLAQRAECQISTGPETRQISGPATSTQIRNF 548


Top