BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0040.1
(445 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67930.1 | Golgi transport complex protein-like protein | Chr... 287 2e-88
>AT1G67930.1 | Golgi transport complex protein-like protein |
Chr1:25474218-25477332 REVERSE LENGTH=832 | 201606
Length = 832
Score = 287 bits (734), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/277 (55%), Positives = 208/277 (75%), Gaps = 7/277 (2%)
Query: 104 NKLRSEVLSRQDDLLSLLFSIKDAESALSVVRSGSSTLQSSVRGIRQEIADSHHQIRFKT 163
++LR++V+SR +LL+ L S+ A+ +LS +RS S+LQSS+R +R ++++ IR K+
Sbjct: 95 SQLRNDVISRHPELLAQLSSLSHADVSLSSLRSSVSSLQSSIRRVRSDLSEPIKSIRSKS 154
Query: 164 VQLSNIHQTTELLQFTVRVLRLSKILRDLMAIGGSEPEKMNLSKAAQLYHEIQCLCEEKS 223
VQLSN+H TELL +VR LRLSK LRDL +P+K++L+KAAQ + EI +C+E
Sbjct: 155 VQLSNLHTATELLSHSVRTLRLSKKLRDLADF--PDPDKIDLTKAAQFHFEILTMCKEYD 212
Query: 224 LSGITVIDEELVWLSKTGNKIRLEGMKVLERGMEGLNQAEVGSGLQVFYNLGELRLTVDT 283
L GI VIDEE+ ++++ G K+R E MKVLERGMEGLNQAEVG+GLQVFYNLGEL+ TVD
Sbjct: 213 LFGIDVIDEEIKFVTEIGEKLRSEAMKVLERGMEGLNQAEVGTGLQVFYNLGELKSTVDQ 272
Query: 284 LINKYKNQCIKCISFALDMKAISASGVSFGPRGILRST-----GGGAKAKEGLWHRMHTC 338
L+NKYK +K +S A+DMKAI++ G +RS+ GGGAK +E LW RM +C
Sbjct: 273 LVNKYKGMAVKSVSVAMDMKAITSGSGGGFGPGGIRSSGSPHIGGGAKVREALWQRMASC 332
Query: 339 MNQIHSIVVAIWHLQRVLSKKRDPFTHVLLLDKVMQE 375
M Q+ S+VVA+WHLQRVLSKKRDPFTHVLLLD+V++E
Sbjct: 333 MEQLCSLVVAVWHLQRVLSKKRDPFTHVLLLDEVIKE 369
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 373 MQEEIEAVELDEHLTMLVLREIGKVLHLLAERAEYQISMGPDALQVTGPATQSQLQQL 430
+Q+EIEAV D LT+LVLREIGK L LA+RAE QIS GP+ Q++GPAT +Q++
Sbjct: 491 IQDEIEAVHPDARLTLLVLREIGKALSNLAQRAECQISTGPETRQISGPATSTQIRNF 548