BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000058.1_g0290.1
         (479 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    94   2e-22
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C...    50   4e-06
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C...    47   4e-05

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 93.6 bits (231), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 3/100 (3%)

Query: 380 IKVVKGSLVVMRGTRYGNLYKLLGTTITGDVAVGISGRDPTASTRLWHMRLGHMSEKGLS 439
           +KV+KG   +++G R+ +LY L G+  TG+  +  + +D    TRLWH RL HMS++G+ 
Sbjct: 29  LKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKD---ETRLWHSRLAHMSQRGME 85

Query: 440 LMCGKGLLKDMKKPCMEFCEHCVFGKAHRVTFSTSNHRSK 479
           L+  KG L   K   ++FCE C++GK HRV FST  H +K
Sbjct: 86  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125


>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 270 VSEEADECFSVTEVSEKIFDKWMLDSGASHHMCPNREWFTTY-RSIDGGTVILSDDSICK 328
           V +   ECFS     E I   W++ S  S+HM P+ ++FTT  RS       +S D    
Sbjct: 251 VPDHVAECFSKYTFHENI---WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSET 307

Query: 329 TV----GLGTIRIKMHDGVVRTLMDVRHIPDLRKNLISLGVLERNGCRIIIE 376
           TV    G+G +    ++G  +T+ +V ++P +  N +S+  L+RNG  + +E
Sbjct: 308 TVAMVEGIGDVTFITNEGN-KTIKNVLYVPGIEGNALSVSQLKRNGFEVSME 358


>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 237 KKTCFSCGELGHFKLKQKNEGYKEKQEMQEAGYVSEEADECFSVTEVSEKIFDK--WMLD 294
           +K C  C +  H +   K   + +K+E ++   V    +   +V  +  K +D   W++ 
Sbjct: 227 EKWCGLCYKNNHNQEDCKFRIHTDKEEKEDEIVVDYRLE---TVPNLGAKTYDDDIWIIH 283

Query: 295 SGASHHMCPNREWFTTYRSIDGGTVILSDDSICKTVGLGTIRIKMHDGVVRTLMDVRHIP 354
             A  +M P  ++FTT       TV   D ++    G G ++I+M +G  +T+ +V  +P
Sbjct: 284 KMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVP 343

Query: 355 DLRKNLISLG 364
            L +N++S G
Sbjct: 344 GLNRNVLSFG 353

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