BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0340.1
(731 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 68 4e-12
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 57 2e-08
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 48 2e-06
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 6 QLQTSKKGTLSVSEYLLRLKTLSDSLATIGHPAADDELVLIVLAGLGPEYESFVTSITTR 65
+L+T G + V++Y ++K L+DSL + P D LV+ VL GL P++++ + I R
Sbjct: 120 ELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHR 179
Query: 66 TIPPSSSELHSLLLTHEFRLQFVSNSSPNPTALFTQTPSP--NPSSSPPFSRSYNPTQNF 123
PS + ++L E RL+ PNPT + + S S +PP + NF
Sbjct: 180 QPFPSFDDAATMLQEEEDRLKRA--IKPNPTHVDHSSSSTVLACSEAPPVT-------NF 230
Query: 124 NRGYRGRSYYRGGGRGRHSNRGGYPRQSVLGPP 156
R + YRG GRG + RG R S P
Sbjct: 231 QRSGGNQMGYRGRGRGNNIFRGRGGRFSYYNMP 263
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 6 QLQTSKKGTLSVSEYLLRLKTLSDSLATIGHPAADDELVLIVLAGLGPEYESFVTSITTR 65
+L+T+ LSV EY +LK+LSD L + P +D LV+ +L GL +Y+ + I +
Sbjct: 122 ELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHK 181
Query: 66 TIPPSSSELHSLLLTHEFRLQFVSNSSPNPT-------ALFTQTPSPNPSSSPPFSRSY- 117
+ PS +E S+LL E RL S SS + T LFT P + + Y
Sbjct: 182 SPFPSFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTV-----PRQQERYPQEYH 236
Query: 118 NPTQNFNRGYRGRSYYRGGG--RGRHSN----RGGYPRQSVLGPPPS 158
N N RG R + RGGG GR++N R P + GPP S
Sbjct: 237 NNNSNMGRG-RSKKKNRGGGSSDGRYNNNNNWRLNQPPTWIYGPPQS 282
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 414 RHLVETALCLLHQSSAPLTFWPDAFQNAIFTINQLPSSVHKGISPFEKLFHKKPDYTYLR 473
R ++E +L + P TF DA A+ IN+ PS+ P E F P Y+YLR
Sbjct: 3 RTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLR 62
Query: 474 SFGCLCF 480
FGC+ +
Sbjct: 63 RFGCVAY 69