BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0440.1
(629 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801... 102 7e-26
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 64 2e-10
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 57 2e-09
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 54 3e-07
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 54 3e-07
>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
Length = 97
Score = 102 bits (254), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Query: 2 SNMIQPQIPRLTKENYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVQKCVLK 61
SN + Q+P LTK NY++W ++M +LG+ D+W+IV+ G++EP E E ++ QK L+
Sbjct: 3 SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLR 60
Query: 62 DSRKMDKKALILIYQGIDGPTFEKVSEAKSSKEA 95
DSRK DKKAL LIYQG+D TFEKV EA S+K+
Sbjct: 61 DSRKRDKKALCLIYQGLDEDTFEKVVEATSAKDG 94
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 16 NYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVQKCVLKDSRKM---DKKALI 72
+YE W L Q LWD+V NG + + +Q L R D KAL
Sbjct: 16 DYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQ 75
Query: 73 LIYQGIDGPTFEKVSEAKSSKEAWNILK--NSFRGVDKVVKVRLQILRGEFERLSMNEGE 130
++ + F K A S+K+ W++L+ N + ++ +V ++ L + E L M + E
Sbjct: 76 ILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKE 135
Query: 131 LVSDYVSRVLSNVNEMKRCGEKCDDVRVMEKILRSLTPKFDNVVIVVEESKDLESMTVDE 190
S Y+ + L + + R + D + + + +L+ FD + ++EE D+ MT
Sbjct: 136 SGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKS 195
Query: 191 LMGTL--QIHE 199
L+ ++HE
Sbjct: 196 LVEYFYYRVHE 206
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 292 CYNCHKLGHYSNECWYKNEVKEESNLVEDEVEINVDPTLLFSCD-GLDESQTNTWYFDTG 350
C C+K H +C ++ +E E E EI VD L + G + W
Sbjct: 230 CGLCYKNNHNQEDCKFRIHTDKE----EKEDEIVVDYRLETVPNLGAKTYDDDIWIIHKM 285
Query: 351 ASNHICGKRELFVEVNESVKGCVKFGDSSKIPVLGKGNILIQLKNGKHNYISDVYYVPAM 410
A ++ + F ++ + K V D + + V GKG++ I++K GK I +V +VP +
Sbjct: 286 APINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGL 345
Query: 411 KNNILSLGQLLEKGYDI 427
N+LS G+++ K Y I
Sbjct: 346 NRNVLSFGKMVSKRYSI 362
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 467 LNSIVKDESWLWHLRLGHLNFDGMKTLASKNMVRGLPCIDHPNKVCEGCIFGKHHRTSFS 526
L KDE+ LWH RL H++ GM+ L K + K CE CI+GK HR +FS
Sbjct: 61 LAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSL--KFCEDCIYGKTHRVNFS 118
Query: 527 KEGRWRASNILELVHTDVCG-PLKPMT 552
G+ N L+ VH+D+ G P P++
Sbjct: 119 T-GQHTTKNPLDYVHSDLWGAPSVPLS 144
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 564 IWLRNMLKHLQCPQVGPTKVFLDNKSAIALAKNPVCHKRSKHIDTRYHFIRE 615
+WL + LQ P PT +F DN +AI +A N V H+R+KHI++ H +RE
Sbjct: 502 MWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 564 IWLRNMLKHLQCPQVGPTKVFLDNKSAIALAKNPVCHKRSKHIDTRYHFIRE 615
+WL + LQ P PT +F DN +AI +A N V H+R+KHI++ H +RE
Sbjct: 502 MWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553