BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0550.1
(552 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 139 7e-35
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 82 1e-16
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 55 1e-07
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 139 bits (350), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 184/403 (45%), Gaps = 58/403 (14%)
Query: 48 LLIGDLNTIMHPSEKNGEPK---PLPGYAKSIFSFTQNFGLQDLGFSGPSFTWSNRQFRG 104
+L+GD + I S+ + P+ G + + ++ L D+ G +TWSN Q
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGL-EEFQNCLRDSDLVDIPSRGVHYTWSNHQDDN 280
Query: 105 KLIQERLDRALANLSWLSAYPDS-KVKHLQGVGSDHLPILLTTEPNFSKDRKPFK----- 158
+I+ +LDRA+AN W S++P + V L GV SDH P ++ E + +K F+
Sbjct: 281 PIIR-KLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCIIILENLPKRSKKCFRYFSFL 338
Query: 159 -----FLPIKLSQW---------------------------NKHTFGHIEQKIKSLTSSI 186
FL W N+ FG+I+ K K S+
Sbjct: 339 STHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSL 398
Query: 187 QT------TNNPDILLNLDYQLAEAYHL----QESIWKEKSRVSHIQLGDRNTKFFHAKA 236
++ TN D L +++ + ++ ES +++KSR+ +Q GD NT+FFH
Sbjct: 399 ESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVI 458
Query: 237 VTRNRKNRINAIKRDDNSWCSDPTEIAQI----FSNNLRIISTSSLPPSQGLIPDLFHAQ 292
+ KN I ++ DD+ + T++ ++ +++ L S P S I D+ +
Sbjct: 459 LANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFR 518
Query: 293 INTTQNLLLTTIPSEEEIKHANFSLKADAAPVSDSFPPFFYQTNWDTVKNGINQLVVNFF 352
N T L+ +PS++EI A F++ + AP DSF F+ +W VK+ V FF
Sbjct: 519 CNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFF 578
Query: 353 RTSHLPPATNHTHICLIPKTKSPQTTADFRPISQLNTTYKIIT 395
RT HL N T I LIPK + FRP+S YKIIT
Sbjct: 579 RTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%)
Query: 398 MANRLKITLPDVISPFQAAYVPGRQITDNIIISQELSYSFKMKRGSKSFFGLKLDMSKAF 457
M RLK + ++I P QA+++PGR TDNI+ QE +S + K+G K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 458 DRVEWSYLEKIMFKLGYHNHWI 479
DR+ W YLE + G+ W+
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWL 82
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 44/240 (18%)
Query: 28 NRTKPWETLSQLL---PDSHMPWLLIGDLNTIMHPSEKNG---EPKPLPGYAKSIFSFTQ 81
R W+ +++L P + PWL++GD N I +E L G + + + +
Sbjct: 100 ERRSLWDDITRLSASSPLCNSPWLVVGDFNQIASVTEHYSLMPSNISLQGL-EDLQACMR 158
Query: 82 NFGLQDLGFSGPSFTWSNRQFRGKLIQERLDRALANLSWLSAYPDSKVKHLQGVGSDHLP 141
+ L DL G +TWSN Q + I +LDRA+ N WL+ +P + SDH
Sbjct: 159 DSDLVDLPCRGVLYTWSNHQ-QDNPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAA 217
Query: 142 --ILLTTEPNFSKDRKPFK----------FLPIKLSQWNKH--------TFGHIEQKIKS 181
++L P SK +K FK F+ L+ W K + G + ++ K
Sbjct: 218 CMVILNNSPPLSK-KKSFKYFSFLSTHPDFISSILAAWQKEIAVGSFMFSLGELLKEAKK 276
Query: 182 LTSSI----------QTTNNP-DILLNLDYQLAEAYHL----QESIWKEKSRVSHIQLGD 226
+ Q +NP D L ++ + ++ ES +K+KSR+ ++ GD
Sbjct: 277 ACRGLNRRGFSNIQAQLMSNPSDFLFRAEHVARKNWNFFAAALESFYKQKSRIKWLKEGD 336