BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0560.1
(542 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 86 1e-17
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 87 1e-17
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 87 1e-17
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 87 1e-17
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 75 1e-13
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 2 IIKSLKVQQSSSLEKYLGTKMFIGSNKNQAFSSLVDQIQHKLSKWQTHLLSQAGRSVVVS 61
I+ S + +YLG + + LV++I+ ++ KW LS AGR ++S
Sbjct: 12 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 71
Query: 62 SIAAAVPRYQMQCFAIPKGISHRIDTIKGLFC---GEKKKSIHTIHWAAICRPRKFGGLG 118
S+ ++ + M F +P ID+I F E + W+ +C P+ GGLG
Sbjct: 72 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLG 131
Query: 119 IRDPFNDNIAFLSKLICCLLKFPQSPWAQ------LLKAKYFPKTPNPTLAKQSHSWVWK 172
IR N L KLI +L S W Q L K ++ + N TL SW+WK
Sbjct: 132 IRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWK 186
Query: 173 SMAAHFGKVNSLLFWDVNNGTNINIWEDYW 202
+ H + + D++NG+N + W D W
Sbjct: 187 KILKHRALASGFVKHDIHNGSNTSFWFDNW 216
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 16 KYLGTKMFIGSNKNQAFSSLVDQIQHKLSKWQTHLLSQAGRSVVVSSIAAAVPRYQMQCF 75
+YLG + + LV++I+ ++ KW LS AGR ++SS+ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 AIPKGISHRIDTIKGLFC---GEKKKSIHTIHWAAICRPRKFGGLGIRDPFNDNIAFLSK 132
+P ID+I F E + W+ +C P+ GGLGIR N L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LICCLLKFPQSPWAQ------LLKAKYFPKTPNPTLAKQSHSWVWKSMAAHFGKVNSLLF 186
LI +L S W Q L K ++ + N TL SW+WK + H + +
Sbjct: 200 LIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 254
Query: 187 WDVNNGTNINIWEDYW 202
D++NG+N + W D W
Sbjct: 255 HDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 16 KYLGTKMFIGSNKNQAFSSLVDQIQHKLSKWQTHLLSQAGRSVVVSSIAAAVPRYQMQCF 75
+YLG + + LV++I+ ++ KW LS AGR ++SS+ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 AIPKGISHRIDTIKGLFC---GEKKKSIHTIHWAAICRPRKFGGLGIRDPFNDNIAFLSK 132
+P ID+I F E + W+ +C P+ GGLGIR N L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LICCLLKFPQSPWAQ------LLKAKYFPKTPNPTLAKQSHSWVWKSMAAHFGKVNSLLF 186
LI +L S W Q L K ++ + N TL SW+WK + H + +
Sbjct: 200 LIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 254
Query: 187 WDVNNGTNINIWEDYW 202
D++NG+N + W D W
Sbjct: 255 HDIHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 16 KYLGTKMFIGSNKNQAFSSLVDQIQHKLSKWQTHLLSQAGRSVVVSSIAAAVPRYQMQCF 75
+YLG + + LV++I+ ++ KW LS AGR ++SS+ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 AIPKGISHRIDTIKGLFC---GEKKKSIHTIHWAAICRPRKFGGLGIRDPFNDNIAFLSK 132
+P ID+I F E + W+ +C P+ GGLGIR N L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LICCLLKFPQSPWAQ------LLKAKYFPKTPNPTLAKQSHSWVWKSMAAHFGKVNSLLF 186
LI +L S W Q L K ++ + N TL SW+WK + H + +
Sbjct: 200 LIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 254
Query: 187 WDVNNGTNINIWEDYW 202
D++NG+N + W D W
Sbjct: 255 HDIHNGSNTSFWFDNW 270
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 30/190 (15%)
Query: 16 KYLGTKMFIGSNKNQAFSSLVDQIQHKLSKWQTHLLSQAGRSVVVSSIAAAVPRYQMQCF 75
+YLG + + LV++I+ ++ KW LS AGR ++SS+ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 76 AIPKGISHRIDTIKGLFC---GEKKKSIHTIHWAAICRPRKFGGLGIRDPFNDNIAFLSK 132
+P ID+I F E + W+ +C P+ GGLGIR N
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN------ 139
Query: 133 LICCLLKFPQSPWAQLLKAKYFPKTPNPTLAKQSHSWVWKSMAAHFGKVNSLLFWDVNNG 192
K ++ + N TL SW+WK + H + + D++NG
Sbjct: 140 -----------------KGSFWSISGNTTLG----SWMWKKILKHRALASGFVKHDIHNG 178
Query: 193 TNINIWEDYW 202
+N + W D W
Sbjct: 179 SNTSFWFDNW 188