BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0570.1
(225 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 8e-07
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 45 3e-05
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 45 3e-05
>AT3G23320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:8344629-8345204 FORWARD
LENGTH=191 | 201606
Length = 191
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 100 NIPEIKCPQPKPA-TSTWKPPETSFLKINVDASFLTFAEPAGIGGIIHDENGDFIIAMAD 158
N +K Q K + T W+ P ++K N D S + +G+ II + G +
Sbjct: 13 NDDNVKGGQTKSSRTDKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCG 72
Query: 159 TIRG-QTAGECECIVILRAVQWAFDLKISHLQIESDNLNL 197
+G QT E EC ++ A+Q A+DL ++ E DN+ +
Sbjct: 73 KFQGRQTIKEAECTALIWAIQCAWDLGYRRVEFEGDNITV 112
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 116 WKPPETSFLKINVDASFLTFAEPAGIGGIIHDENGDFIIAMADTIRGQTAG-------EC 168
W+ P ++K NVD SF+ P G I+ D NG + A GQ G EC
Sbjct: 503 WRRPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNGRYEFA------GQAIGNCIDNALEC 556
Query: 169 ECIVILRAVQWAFDLKISHLQIESDNLNLIHHVNGRRRE---LNW 210
E +L A+Q + + E DN + +NG + NW
Sbjct: 557 EFQALLMAMQHCWSKGYRRICFEGDNKEMFDLINGLKMHFGAFNW 601
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 6 LSEPSNHEVPDWNFIWKIQTIPRIKLFLWKCCTNSLPVRDKIG-KYIGNHFTCGFCAYGQ 64
+SEPS + P + IWK QT P+I+ FLWKC +NSLPV + +++ C C +
Sbjct: 245 VSEPSLN--PIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK 302
Query: 65 GDVVYL 70
V +L
Sbjct: 303 ETVNHL 308