BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0830.1
(154 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50010.1 | tubulin alpha-2 chain | Chr1:18517737-18519729 FOR... 58 2e-10
AT1G04820.1 | tubulin alpha-4 chain | Chr1:1356421-1358266 REVER... 58 2e-10
AT4G14960.1 | Tubulin/FtsZ family protein | Chr4:8548753-8550319... 58 2e-10
AT4G14960.2 | Tubulin/FtsZ family protein | Chr4:8548769-8550319... 58 2e-10
AT5G19780.1 | tubulin alpha-5 | Chr5:6687212-6688926 FORWARD LEN... 57 4e-10
>AT1G50010.1 | tubulin alpha-2 chain | Chr1:18517737-18519729
FORWARD LENGTH=450 | 201606
Length = 450
Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 26/28 (92%)
Query: 1 MYRGDVVPKDVNAVVATIKTKRTIQFVD 28
MYRGDVVPKDVNA V TIKTKRTIQFVD
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
>AT1G04820.1 | tubulin alpha-4 chain | Chr1:1356421-1358266 REVERSE
LENGTH=450 | 201606
Length = 450
Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 26/28 (92%)
Query: 1 MYRGDVVPKDVNAVVATIKTKRTIQFVD 28
MYRGDVVPKDVNA V TIKTKRTIQFVD
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
>AT4G14960.1 | Tubulin/FtsZ family protein | Chr4:8548753-8550319
REVERSE LENGTH=427 | 201606
Length = 427
Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 26/28 (92%)
Query: 1 MYRGDVVPKDVNAVVATIKTKRTIQFVD 28
MYRGDVVPKDVNA V TIKTKRTIQFVD
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
>AT4G14960.2 | Tubulin/FtsZ family protein | Chr4:8548769-8550319
REVERSE LENGTH=450 | 201606
Length = 450
Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 26/28 (92%)
Query: 1 MYRGDVVPKDVNAVVATIKTKRTIQFVD 28
MYRGDVVPKDVNA V TIKTKRTIQFVD
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
>AT5G19780.1 | tubulin alpha-5 | Chr5:6687212-6688926 FORWARD
LENGTH=450 | 201606
Length = 450
Score = 57.4 bits (137), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 1 MYRGDVVPKDVNAVVATIKTKRTIQFVD 28
MYRGDVVPKDVNA V TIKTKRT+QFVD
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTVQFVD 345