BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g0990.1
(141 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40010.1 | Ribosomal protein L10 family protein | Chr2:167085... 179 1e-56
AT3G09200.1 | Ribosomal protein L10 family protein | Chr3:282336... 176 3e-55
AT3G11250.1 | Ribosomal protein L10 family protein | Chr3:352145... 174 1e-54
AT3G09200.2 | Ribosomal protein L10 family protein | Chr3:282336... 101 7e-27
>AT2G40010.1 | Ribosomal protein L10 family protein |
Chr2:16708578-16710448 REVERSE LENGTH=317 | 201606
Length = 317
Score = 179 bits (454), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 90/109 (82%), Positives = 98/109 (89%), Gaps = 2/109 (1%)
Query: 6 KRTKPVAGKKIVYDKKLCTLLDEYTQILVVEADNVGSNQLQTIRKGLRGDSVVLMGKNTM 65
K TK A KKIVYD KLC LL+EY+QILVV ADNVGS QLQ IRKGLRGDSVVLMGKNTM
Sbjct: 4 KATK--AEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 61
Query: 66 IKRSVRLHAEKTGNKAFLNLIQLLVGNVGLIFTKGDLKEVSEEVAKYKV 114
+KRSVR+HA+KTGN+AFL+L+ LL GNVGLIFTKGDLKEVSEEVAKYKV
Sbjct: 62 MKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 110
>AT3G09200.1 | Ribosomal protein L10 family protein |
Chr3:2823364-2825020 REVERSE LENGTH=320 | 201606
Length = 320
Score = 176 bits (445), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 86/103 (83%), Positives = 91/103 (88%)
Query: 12 AGKKIVYDKKLCTLLDEYTQILVVEADNVGSNQLQTIRKGLRGDSVVLMGKNTMIKRSVR 71
A KKI YD KLC L+DEYTQILVV ADNVGS QLQ IRKGLRGDSVVLMGKNTM+KRSVR
Sbjct: 7 AEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVR 66
Query: 72 LHAEKTGNKAFLNLIQLLVGNVGLIFTKGDLKEVSEEVAKYKV 114
+H+E TGN A LNL+ LL GNVGLIFTKGDLKEVSEEVAKYKV
Sbjct: 67 IHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 109
>AT3G11250.1 | Ribosomal protein L10 family protein |
Chr3:3521453-3522826 FORWARD LENGTH=323 | 201606
Length = 323
Score = 174 bits (442), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 85/103 (82%), Positives = 91/103 (88%)
Query: 12 AGKKIVYDKKLCTLLDEYTQILVVEADNVGSNQLQTIRKGLRGDSVVLMGKNTMIKRSVR 71
A KKI YD KLC L+DEYTQILVV ADNVGS QLQ IRKGLRGDSVVLMGKNTM+KRSVR
Sbjct: 7 AEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVR 66
Query: 72 LHAEKTGNKAFLNLIQLLVGNVGLIFTKGDLKEVSEEVAKYKV 114
+H+E +GN A LNL+ LL GNVGLIFTKGDLKEVSEEVAKYKV
Sbjct: 67 IHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 109
>AT3G09200.2 | Ribosomal protein L10 family protein |
Chr3:2823364-2825020 REVERSE LENGTH=287 | 201606
Length = 287
Score = 101 bits (252), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 64/109 (58%), Gaps = 35/109 (32%)
Query: 6 KRTKPVAGKKIVYDKKLCTLLDEYTQILVVEADNVGSNQLQTIRKGLRGDSVVLMGKNTM 65
K TK A KKI YD KLC L+DEYTQILV
Sbjct: 3 KATK--AEKKIAYDTKLCQLIDEYTQILV------------------------------- 29
Query: 66 IKRSVRLHAEKTGNKAFLNLIQLLVGNVGLIFTKGDLKEVSEEVAKYKV 114
RSVR+H+E TGN A LNL+ LL GNVGLIFTKGDLKEVSEEVAKYKV
Sbjct: 30 --RSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 76