BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1000.1
(446 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 67 2e-11
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 57 2e-08
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 57 2e-08
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 57 3e-08
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 55 6e-08
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 63 QIQNITNPYCCIDSISKEFIEYFQNLFKADPVSEPPTEI--INAYKVFSIEQLVA--ISR 118
+++N+T + + + Y+ +L +D P + I F +A +S
Sbjct: 477 RVENVTQ-------VKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSA 529
Query: 119 IPSHEEIKEVVMKMRSIKSPSPDGLPCYFFQHNWDIIGQDLTSYIQSVFTTGLIDPLLNN 178
+PS +EI V M K+P PD FF +W ++ + ++ F TG + N
Sbjct: 530 LPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNA 589
Query: 179 TTIALIPKTRNPSTASEHRPISLCNSVYKFIT 210
T I LIPK S RP+S C VYK IT
Sbjct: 590 TAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 331 ITHLLFADDLIIFGKANQENLNKVIQIMNQYGSFSGQQVNYSKSSLYFSKGVPPDISSNL 390
ITHL FADDL++F + ++ ++QI ++ FSG Q++ KS++Y + GV + +++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 391 IQTLNAPLMTDRDKYLGALVLKKEYRIDSYNWLIDK 426
+ + +YLG +L K+ Y L++K
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEK 102
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 331 ITHLLFADDLIIFGKANQENLNKVIQIMNQYGSFSGQQVNYSKSSLYFSKGVPPDISSNL 390
ITHL FADDL++F + ++ ++QI ++ FSG Q++ KS++Y + GV + +++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 391 IQTLNAPLMTDRDKYLGALVLKKEYRIDSYNWLIDK 426
+ + +YLG +L K+ Y L++K
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEK 102
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 331 ITHLLFADDLIIFGKANQENLNKVIQIMNQYGSFSGQQVNYSKSSLYFSKGVPPDISSNL 390
ITHL FADDL++F + ++ ++QI ++ FSG Q++ KS++Y + GV + +++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 391 IQTLNAPLMTDRDKYLGALVLKKEYRIDSYNWLIDK 426
+ + +YLG +L K+ Y L++K
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEK 102
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 213 IANRIMPYLEDGIMWTQNAFISTRQIMDNIVITKELLHSMHASRAKK--KDFFSLKMDMA 270
+ R+ P + + I Q +FI R DNIV +E +HSM R KK K + LK+D+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSM---RRKKGVKGWMLLKLDLE 57
Query: 271 KAYDRVSWEFLECVLKATGL 290
KAYDR+ W++LE L + G
Sbjct: 58 KAYDRIRWDYLEDTLISAGF 77