BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1010.1
(437 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 113 9e-27
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 65 3e-12
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 53 3e-07
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 53 3e-07
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 54 3e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 113 bits (282), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 135/287 (47%), Gaps = 15/287 (5%)
Query: 1 MPKSVSNHIEKIERSFWWGHSQSDRKLHFINWDIISSPKHKGGLGIRSIGEVNMSLISKM 60
+PK+V I + FWW + Q + +H+ WD +S K +GG+G + I N++L+ K
Sbjct: 13 LPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQ 72
Query: 61 TWKFLTQPNEVWVRLLHAKYLKNENIWSYRAINGSSHLWKSLNETKDIIRNNSIWQVVNG 120
W+ L++P + ++ ++Y + + + S +WKS++ +++I+R + V NG
Sbjct: 73 MWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNG 132
Query: 121 LSIKIRSDPWVPN-------RINNIPSDNSNLPHNIVYVLELIMQDTQEWNITLIQRWFS 173
I I W+ + R+ +P +I+ V +LI + +EW +I+ F
Sbjct: 133 EDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFP 192
Query: 174 QEEAQIILNIPIHHPSSTDKLIWCPTQSGKFSSKSFYEEIK--VNPILSQQAHEFP---- 227
+ E ++I + D W T SG ++ KS Y + +N S Q P
Sbjct: 193 EVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNP 252
Query: 228 -WSQIWKINQMQPKIQTFIWKLIHKRIPTLTNIGIRIPQIDQICKIC 273
+ +IWK +Q PKIQ F+WK + +P + R + C C
Sbjct: 253 IYQKIWK-SQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRC 298
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 1 MPKSVSNHIEKIERSFWWGHSQSDRKLHFINWD-IISSPKHKGGLGIRSIGEVNMSLISK 59
+ K + + FWW ++ RK+ ++ W + S + GGLG R +G N +L++K
Sbjct: 13 LSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAK 72
Query: 60 MTWKFLTQPNEVWVRLLHAKYLKNENIWSYRAINGSSHLWKSLNETKDIIRNNSIWQVVN 119
+++ + QP+ + RLL ++Y + ++ S+ W+S+ ++++ + + +
Sbjct: 73 QSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGD 132
Query: 120 GLSIKIRSDPWV 131
G+ K+ D W+
Sbjct: 133 GIHTKVWLDRWI 144
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 1 MPKSVSNHIEKIERSFWWGHSQSDRKLHFINWDIISSPKHKGGLGIRSIGEVNMSLISKM 60
+P + I+ I SF W + + K + W + +PK +GGLGIRS+ E N + K+
Sbjct: 141 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKL 200
Query: 61 TWKFLTQPNEVWVRLLHAKYLKNENIWSYRAINGSSHL----WKSLNETKDIIRNNSIWQ 116
W+ L+ + +WV+ L L+ + WS I+G++ L WK + + + +
Sbjct: 201 IWRMLSSTS-LWVQWLRLYLLRKGSFWS---ISGNTTLGSWMWKKILKHRALASGFVKHD 256
Query: 117 VVNGLSIKIRSDPW 130
+ NG + D W
Sbjct: 257 IHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 1 MPKSVSNHIEKIERSFWWGHSQSDRKLHFINWDIISSPKHKGGLGIRSIGEVNMSLISKM 60
+P + I+ I SF W + + K + W + +PK +GGLGIRS+ E N + K+
Sbjct: 141 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKL 200
Query: 61 TWKFLTQPNEVWVRLLHAKYLKNENIWSYRAINGSSHL----WKSLNETKDIIRNNSIWQ 116
W+ L+ + +WV+ L L+ + WS I+G++ L WK + + + +
Sbjct: 201 IWRMLSSTS-LWVQWLRLYLLRKGSFWS---ISGNTTLGSWMWKKILKHRALASGFVKHD 256
Query: 117 VVNGLSIKIRSDPW 130
+ NG + D W
Sbjct: 257 IHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 1 MPKSVSNHIEKIERSFWWGHSQSDRKLHFINWDIISSPKHKGGLGIRSIGEVNMSLISKM 60
+P + I+ I SF W + + K + W + +PK +GGLGIRS+ E N + K+
Sbjct: 141 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKL 200
Query: 61 TWKFLTQPNEVWVRLLHAKYLKNENIWSYRAINGSSHL 98
W+ L+ + +WV+ L L+ + WS I+G++ L
Sbjct: 201 IWRMLSSTS-LWVQWLRLYLLRKGSFWS---ISGNTTL 234