BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1130.1
(683 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 122 6e-31
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 49 2e-06
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 50 4e-06
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 47 3e-05
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 122 bits (305), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 112/210 (53%), Gaps = 12/210 (5%)
Query: 21 DVHHSDSPTTVLITPLLSG-DNYPSWSRAMKMALRAKNKFVFVDGTIPRPTSTDEIHS-W 78
D+HH P+ I L DNY +W + LR KF F+DGT+P+P ++ W
Sbjct: 23 DIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPW 79
Query: 79 DRCNDLVTSWLLNSVDPDIRQSILYDESAAEIWRNLHERFHQTNAPKIFQLKRAISCLKQ 138
++CN +V WL+NS+ + +S++Y E+A ++W +L F KI+QL+R ++ L+Q
Sbjct: 80 EQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQ 139
Query: 139 DGSDVSAYFTRLKSLQDELNSLNAIKPCICGH-----GKSLFERYNQDRAMEFLQG--LH 191
G V YF +L + EL+ I C CG K E +++ EFL G L+
Sbjct: 140 GGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLN 199
Query: 192 ERFSAIRSQILLMEPFPSILRIHSLVKQEE 221
+ F A+ ++I+ +P PS+ ++VK E
Sbjct: 200 QGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 464 KTIGRGDPKDGLYYLRTEPRILFSNFSKCNSDSS-LWHYRLGHPSHSRFNYLIRN--LSC 520
+TI +G+ D LY L+ SN ++ D + LWH RL H S L++ L
Sbjct: 36 RTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDS 95
Query: 521 IPINSINKSSCDVCPLSKFSRLPFPISTSISTSIFELLHVDVWGPFTIP 569
++S+ C+ C K R+ F + + + +H D+WG ++P
Sbjct: 96 SKVSSLK--FCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 22/195 (11%)
Query: 31 VLITPLLSGDNYPSWSRAMKMALRAKNKFVFVDGT-IPRPTSTDEIHSWDRCNDLVTSWL 89
+ +T L+ NY W + + +DG+ P P + W + LV W+
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKR---WKERDGLVKMWI 78
Query: 90 LNSVDPDIRQSIL-YDESAAEIWRNLHERFHQTNAPKIFQLKRAISCLKQDGSDVSAYFT 148
++ + +I+ +A ++W +L F + Q + + D V Y
Sbjct: 79 YGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQ 138
Query: 149 RLKSLQDELNSLNAIKPCICGHGKSLFERYNQDRA--MEFLQGLHERFSAIRSQILLMEP 206
+LKSL D L ++++ P DR M L GL E++ I + I P
Sbjct: 139 KLKSLSDLLTNVDS--PI-------------SDRVLVMHLLNGLTEKYDYILNVIKHKSP 183
Query: 207 FPSILRIHSLVKQEE 221
FPS S++ EE
Sbjct: 184 FPSFTEARSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 81/182 (44%), Gaps = 16/182 (8%)
Query: 41 NYPSWSRAMKMALRAKNKFVFVDGTIPRPTSTDEIHSWDRCNDLVTSWLLNSVDP-DIRQ 99
NY +W + + +DGT+ PT+ ++++ W + + +V L ++ P +
Sbjct: 30 NYDAWRELFLTHCLSFDVMGHIDGTL-LPTNANDVN-WQKRDGIVKLSLYGTLTPKQFQG 87
Query: 100 SILYDESAAEIWRNLHERFHQTNAPKIFQLKRAISCLKQDGSDVSAYFTRLKSLQDELNS 159
S + ++ +IW + +F + +L + V+ Y+ ++K L D L +
Sbjct: 88 SFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRN 147
Query: 160 LNAIKPCICGHGKSLFERYNQDRAMEFLQGLHERFSAIRSQILLMEPFPSILRIHSLVKQ 219
++ P +++ M L GL+ +F I + I +PFPS +++++
Sbjct: 148 VDV--PVT-----------DRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQE 194
Query: 220 EE 221
EE
Sbjct: 195 EE 196