BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1420.1
(949 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 92 6e-20
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 80 3e-16
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 70 3e-12
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 54 3e-08
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 47 1e-05
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 28/249 (11%)
Query: 35 LSSTNYIFWKSQFLPLLRSYDVLSIVDGSLPCPTKFIHLHPSDPPTLNPDYINWHKQDQM 94
+ +NY W+ FL S+DV+ +DG+L PT N + +NW K+D +
Sbjct: 26 IEESNYDAWRELFLTHCLSFDVMGHIDGTL-LPT-------------NANDVNWQKRDGI 71
Query: 95 ILSWLLASLT-EETHSQVLDLTTSHEVWSELEKSYSSHSRARVSNLKNDLQNLKKGSDSI 153
+ L +LT ++ + +TS ++W ++ + ++ AR L ++L+ G +
Sbjct: 72 VKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRV 131
Query: 154 QTYFNKAKSIALQLRQASKPIDDDDLCDIILRGLSSDYGSFRAAFSLTSQSFSVSELLGL 213
Y+ K K +A LR P+ D +L +L GL+ + + S + +
Sbjct: 132 ADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATM 191
Query: 214 LLIEENRLQHEISFN-------LANSSINLTQAPSFRGFHRGPSSYSHYRGRGRHDLRSH 266
L EE+RL+ I N +++ + ++AP F R + YRGRGR
Sbjct: 192 LQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGR------ 245
Query: 267 GRTVFRGRS 275
G +FRGR
Sbjct: 246 GNNIFRGRG 254
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 79.7 bits (195), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 4 SSNSSPHSSSSSSSSLHLPSPSTVNQYVSNKLSSTNYIFWKSQFLPLLRSYDVLSIVDGS 63
S S P S +H PS ++ + ++ NY+ WK +F LR +DG+
Sbjct: 9 SPTSDPDSPYYLPPDIHHPSDFSIQKLSKDE---DNYVAWKIRFRSFLRVTKKFGFIDGT 65
Query: 64 LPCPTKFIHLHPSDPPTLNPDYINWHKQDQMILSWLLASLTEETHSQVLDLTTSHEVWSE 123
LP P F +P Y W + + M++ WL+ S+T++ V+ T+H++W +
Sbjct: 66 LPKPDPF-----------SPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWED 114
Query: 124 LEKSYSSHSRARVSNLKNDLQNLKKGSDSIQTYFNKAKSIALQLRQ 169
L + + ++ L+ L L++G DS++ YF K + ++L +
Sbjct: 115 LRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSE 160
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 15/192 (7%)
Query: 30 YVSNKLSSTNYIFWKSQFLPLLRSYDVLSIVDGSLPCPTKFIHLHPSDPPTLNPDYINWH 89
+V+ L+ NY W+ F L S+ VL +DGS PT W
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPTPMTEKR-------------WK 68
Query: 90 KQDQMILSWLLASLTEETHSQVLDL-TTSHEVWSELEKSYSSHSRARVSNLKNDLQNLKK 148
++D ++ W+ ++T+ ++ + T+ ++W LE + + AR +N+L+
Sbjct: 69 ERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTI 128
Query: 149 GSDSIQTYFNKAKSIALQLRQASKPIDDDDLCDIILRGLSSDYGSFRAAFSLTSQSFSVS 208
S+ Y K KS++ L PI D L +L GL+ Y S S +
Sbjct: 129 DDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFT 188
Query: 209 ELLGLLLIEENR 220
E +LL+EE+R
Sbjct: 189 EARSMLLMEESR 200
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 688 HRHIVETGLALLAHANLPLSFWDFAFETAVYLINRLPTPLLHHNSPLEVLFHTKPDYDYL 747
+R I+E ++L LP +F A TAV++IN+ P+ ++ + P EV F + P Y YL
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 748 KTFGCACF 755
+ FGC +
Sbjct: 62 RRFGCVAY 69
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 527 WHSRLGHPAFRTMKHIIQSNKLSFS--SLLPFICTPCQMAKSHSLPHKTCISPVNSPLEL 584
WHSRL H + R M+ +++ L S S L F C C K+H + T +PL+
Sbjct: 72 WHSRLAHMSQRGMELLVKKGFLDSSKVSSLKF-CEDCIYGKTHRVNFSTGQHTTKNPLDY 130
Query: 585 IHSDVWG-PSSCSSF 598
+HSD+WG PS SF
Sbjct: 131 VHSDLWGAPSVPLSF 145