BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1600.1
(479 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 122 8e-30
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 122 8e-30
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 122 4e-29
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 86 1e-19
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 91 4e-19
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 122 bits (306), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 3/268 (1%)
Query: 211 YAPSVSHLMFADDLFFFGKASNSNILALKNILDEYSNCSGQLINFQKSSIHLSTNCDEEK 270
Y ++HL FADDL F S+I + I ++++ SG I+ +KS+I+++ D +K
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63
Query: 271 REMVIRTLRVKAMKIDDVYLGTYLLKSKHKISSYDGILNKVENKLKGWKKNTLSHAGRTI 330
+ ++ + + + YLG LL K S Y ++ K+ ++ W LS AGR
Sbjct: 64 AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 331 LVKSELSSIPIYFLSTNLVPKGVIDRIEKCQRNFWWGHNTEKTKMHYLNWKKLRDPQKDG 390
L+ S + S+ +++S +P I I+ +F W TK + W + P+ +G
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 391 GLGIRNMGVVNQALVRKLVWRFQSEPTALWVRLLTAKYLKHEDFWKFKAKPSTTSTATWR 450
GLGIR++ N+ + KL+WR S T+LWV+ L L+ FW +T + W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGN-TTLGSWMWK 240
Query: 451 SLLEMREFIAKGRCYLVGNGKDIKIWND 478
+L+ R + + + NG + W D
Sbjct: 241 KILKHRALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 122 bits (306), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 3/268 (1%)
Query: 211 YAPSVSHLMFADDLFFFGKASNSNILALKNILDEYSNCSGQLINFQKSSIHLSTNCDEEK 270
Y ++HL FADDL F S+I + I ++++ SG I+ +KS+I+++ D +K
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63
Query: 271 REMVIRTLRVKAMKIDDVYLGTYLLKSKHKISSYDGILNKVENKLKGWKKNTLSHAGRTI 330
+ ++ + + + YLG LL K S Y ++ K+ ++ W LS AGR
Sbjct: 64 AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 331 LVKSELSSIPIYFLSTNLVPKGVIDRIEKCQRNFWWGHNTEKTKMHYLNWKKLRDPQKDG 390
L+ S + S+ +++S +P I I+ +F W TK + W + P+ +G
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 391 GLGIRNMGVVNQALVRKLVWRFQSEPTALWVRLLTAKYLKHEDFWKFKAKPSTTSTATWR 450
GLGIR++ N+ + KL+WR S T+LWV+ L L+ FW +T + W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGN-TTLGSWMWK 240
Query: 451 SLLEMREFIAKGRCYLVGNGKDIKIWND 478
+L+ R + + + NG + W D
Sbjct: 241 KILKHRALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 122 bits (305), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 3/264 (1%)
Query: 215 VSHLMFADDLFFFGKASNSNILALKNILDEYSNCSGQLINFQKSSIHLSTNCDEEKREMV 274
++HL FADDL F S+I + I ++++ SG I+ +KS+I+++ D +K + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKAD-I 66
Query: 275 IRTLRVKAMKIDDVYLGTYLLKSKHKISSYDGILNKVENKLKGWKKNTLSHAGRTILVKS 334
+ + + + YLG LL K S Y ++ K+ ++ W LS AGR L+ S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 335 ELSSIPIYFLSTNLVPKGVIDRIEKCQRNFWWGHNTEKTKMHYLNWKKLRDPQKDGGLGI 394
+ S+ +++S +P I I+ +F W TK + W + P+ +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 395 RNMGVVNQALVRKLVWRFQSEPTALWVRLLTAKYLKHEDFWKFKAKPSTTSTATWRSLLE 454
R++ N+ + KL+WR S T+LWV+ L L+ FW +T + W+ +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGN-TTLGSWMWKKILK 244
Query: 455 MREFIAKGRCYLVGNGKDIKIWND 478
R + + + NG + W D
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFD 268
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 85.9 bits (211), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 338 SIPIYFLSTNLVPKGVIDRIEKCQRNFWWGHNTEKTKMHYLNWKKL-RDPQKDGGLGIRN 396
++P+Y +S + K + ++ FWW K K+ ++ W+KL + + DGGLG R+
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 397 MGVVNQALVRKLVWRFQSEPTALWVRLLTAKYLKHEDFWKFKAKPSTTSTATWRSLLEMR 456
+G NQAL+ K +R +P L RLL ++Y H + T + WRS++ R
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSM--MECSVGTRPSYAWRSIIHGR 119
Query: 457 EFIAKGRCYLVGNGKDIKIWND 478
E +++G +G+G K+W D
Sbjct: 120 ELLSRGLLRTIGDGIHTKVWLD 141
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 2/190 (1%)
Query: 289 YLGTYLLKSKHKISSYDGILNKVENKLKGWKKNTLSHAGRTILVKSELSSIPIYFLSTNL 348
YLG LL K S Y ++ K+ ++ W LS AGR L+ S + S+ +++S
Sbjct: 27 YLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 86
Query: 349 VPKGVIDRIEKCQRNFWWGHNTEKTKMHYLNWKKLRDPQKDGGLGIRNMGVVNQALVRKL 408
+P I I+ +F W TK + W + P+ +GGLGIR++ N+ + KL
Sbjct: 87 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKL 146
Query: 409 VWRFQSEPTALWVRLLTAKYLKHEDFWKFKAKPSTTSTATWRSLLEMREFIAKGRCYLVG 468
+WR S T+LWV+ L L+ FW +T + W+ +L+ R + + +
Sbjct: 147 IWRMLSS-TSLWVQWLRLYLLRKGSFWSISGN-TTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 469 NGKDIKIWND 478
NG + W D
Sbjct: 205 NGSNTSFWFD 214