BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1610.1
(184 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 72 7e-15
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 65 2e-12
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 49 5e-07
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 49 9e-07
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 42 7e-05
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 72.0 bits (175), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 21 VNELIDING-SWKQQLITHLFDSLSAKEILKIPLIHREAEDKVVWVHTEKGNFTTKSLY- 78
V++LID +G W++ +I LF + K I ++ R D W +T G++T KS Y
Sbjct: 171 VSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYW 230
Query: 79 --VTIVKEKPTSSHTSELLHGLSWKKVWAKMNLAPRVRMFLWRVLHDALPTKNRSLRFNP 136
I+ ++ + SE ++K+W K +P+++ FLW+ L ++LP +
Sbjct: 231 VLTQIINKRSSPQEVSEPSLNPIYQKIW-KSQTSPKIQHFLWKCLSNSLPVAGALAYRHL 289
Query: 137 SVSQICKNCKEEEEDIDHLFRTCRLARETWICPPLNLRLEG 177
S C C +E ++HL C AR TW + + L G
Sbjct: 290 SKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGG 330
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 65.1 bits (157), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 21 VNELIDINGS---WKQQLITHLFDSLSAKEILKIPLIHREAEDKVVWVHTEKGNFTTKSL 77
+N L + GS W I+ D I +I L + DK++W + G +T +S
Sbjct: 75 INNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSG 134
Query: 78 YVTIVKEKPTSSHTSELLHG-LSWK-KVWAKMNLAPRVRMFLWRVLHDALPT----KNRS 131
Y + + T+ HG + K ++W + + P+++ FLWR L AL T R
Sbjct: 135 YWLLTHDPSTNIPAINPPHGSIDLKTRIW-NLPIMPKLKHFLWRALSQALATTERLTTRG 193
Query: 132 LRFNPSVSQICKNCKEEEEDIDHLFRTCRLARETW 166
+R +PS C C E E I+H TC A W
Sbjct: 194 MRIDPS----CPRCHRENESINHALFTCPFATMAW 224
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 101 KKVWAKMNLAPRVRMFLWRVLHDALPTKNRSLRFNPSVSQICKNCKEEEEDIDHLFRTCR 160
+ +W K+++AP+++ FLWR + AL T R N IC+ C EEE I H+ C
Sbjct: 35 QAIW-KLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCP 93
Query: 161 LARETW 166
+ W
Sbjct: 94 YTQSVW 99
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 102 KVWAKMNLAPRVRMFLWRVLHDALPT----KNRSLRFNPSVSQICKNCKEEEEDIDHLFR 157
K+W K+ AP+++ FLW++L AL T K R +R +P C C +E+E HLF
Sbjct: 17 KIW-KLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQ----CHRCCQEDETSQHLFF 71
Query: 158 TCRLARETWIC---PPLNLRLEG 177
C A++ W P LR G
Sbjct: 72 DCFYAQQVWRASGIPHQELRTTG 94
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 98 LSWKK-VWAKMNLAPRVRMFLWRVLHDALPTKNRSLRFNPSVSQICKNCKEEEEDIDHLF 156
+SW K VW K P+ +W D LPTK R + + C C + ED DHLF
Sbjct: 46 VSWAKTVWFK-GATPKHAFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLF 104
Query: 157 RTCRLARETWICPPLNLRLEG 177
TC A W + L L
Sbjct: 105 LTCEFACFLWHTVSVRLELPA 125