BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1700.1
(270 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51220.1 | WIP domain protein 5 | Chr1:18989925-18992034 REVE... 55 2e-08
AT3G20880.1 | WIP domain protein 4 | Chr3:7313759-7315792 REVERS... 46 2e-05
AT3G57670.1 | C2H2-type zinc finger family protein | Chr3:213709... 44 6e-05
>AT1G51220.1 | WIP domain protein 5 | Chr1:18989925-18992034 REVERSE
LENGTH=337 | 201606
Length = 337
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 64/136 (47%), Gaps = 35/136 (25%)
Query: 25 YSSSSSSSSSTYPSFPYPQTNNNNNINYNSSCIQYYHQQSTSTPSPPPSPPLREALPLLT 84
YS+S S +++ S+ Y T N N IN H +TST P SPPLREALPLL+
Sbjct: 21 YSTSLSYIYNSHGSYYYSNTTNPNYIN---------HTHTTSTS--PNSPPLREALPLLS 69
Query: 85 TSPVRHEEQETSCSAMEDDDHEDENNNIEKVRRLFRDDINHHHQLCLSDPHVSETVTFAL 144
SP+RH+EQ+ M D H+ ++N L DP VT L
Sbjct: 70 LSPIRHQEQQDQHYFM--DTHQISSSNF------------------LDDP----LVTVDL 105
Query: 145 QIGLPTQSNSTSITTN 160
+GLP SI +N
Sbjct: 106 HLGLPNYGVGESIRSN 121
>AT3G20880.1 | WIP domain protein 4 | Chr3:7313759-7315792 REVERSE
LENGTH=412 | 201606
Length = 412
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 48/159 (30%)
Query: 1 MTDPYSNFFTGW-----FNFNPHHHHLQPYSSSSSSSSSTYPSFPYPQTNNNNNINYNSS 55
M DP F G+ ++FN Y++S S +++ SF YP N NIN N +
Sbjct: 65 MADPDCIFRNGYVDYYNYSFN--------YATSLSRIYNSHDSFYYPHQTTNPNINENPN 116
Query: 56 CIQYYHQQSTSTPSPPPSPPLREALPLLTTSPVRHEEQETSCS-----AMEDDDHEDENN 110
+ P SPPLREALPLL+ SP+ H+ QE + + ME + +N
Sbjct: 117 L------------TSPDSPPLREALPLLSLSPI-HKHQEPTANHHEYYFMETTETSSNSN 163
Query: 111 NIEKVRRLFRDDINHHHQLCLSDPHVSETVTFALQIGLP 149
+++ + +R D VT L +GLP
Sbjct: 164 FLDQCQDSYRHD-----------------VTVDLHLGLP 185
>AT3G57670.1 | C2H2-type zinc finger family protein |
Chr3:21370936-21373121 FORWARD LENGTH=383 | 201606
Length = 383
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 51/94 (54%), Gaps = 22/94 (23%)
Query: 1 MTDPYSNFFTGWFNFNPHHHHLQPYSSSSSSSSSTYPS------FPYPQTNNNNNINYNS 54
MTDPYSNFFT WF NP HH+ P SS++ S P F +PQ+ +
Sbjct: 1 MTDPYSNFFTDWFKSNPFHHY--PNSSTNPSPHPLPPVTPPSSFFFFPQSGDL------- 51
Query: 55 SCIQYYHQQSTSTPSPPPSPPLREALPLLTTSPV 88
++ P+PPPSPPLREALPLL+ SP
Sbjct: 52 -------RRPPPPPTPPPSPPLREALPLLSLSPA 78