BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1710.1
(99 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07970.1 | Pectin lyase-like superfamily protein | Chr3:25410... 106 3e-28
AT3G57510.1 | Pectin lyase-like superfamily protein | Chr3:21283... 104 8e-28
AT2G41850.1 | polygalacturonase ADPG2-like protein | Chr2:174619... 97 4e-25
AT2G43890.1 | Pectin lyase-like superfamily protein | Chr2:18176... 95 3e-24
AT1G05650.1 | Pectin lyase-like superfamily protein | Chr1:16902... 93 1e-23
>AT3G07970.1 | Pectin lyase-like superfamily protein |
Chr3:2541006-2543370 FORWARD LENGTH=439 | 201606
Length = 439
Score = 106 bits (264), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 73/96 (76%), Gaps = 1/96 (1%)
Query: 1 MRNVSNPIIIDQNYCDQKDPCNEQESSVHVYDVLYKNIEGTSASDVAMSFDCSKSYPCRG 60
M+NV+NPIII+Q+YCD+ + C EQ+S+V V +VLYKNI+GTS+ +A+ F CSK+ PCRG
Sbjct: 343 MKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRG 402
Query: 61 IVLEDINLVGQ-QGKEAKAVCNNVKLTKTGKITPRC 95
I ++++ LV Q Q +KA C+NVKL G ++P C
Sbjct: 403 ISMQNVKLVDQTQQDVSKASCSNVKLDTRGNVSPLC 438
>AT3G57510.1 | Pectin lyase-like superfamily protein |
Chr3:21283546-21285842 REVERSE LENGTH=431 | 201606
Length = 431
Score = 104 bits (260), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 68/95 (71%), Gaps = 6/95 (6%)
Query: 1 MRNVSNPIIIDQNYCDQKDPCNEQESSVHVYDVLYKNIEGTSASDVAMSFDCSKSYPCRG 60
M NV NPIIIDQ+YCD KD C +QES+V V +V+YKNI GTSA+DVA++ +CS+ YPC+G
Sbjct: 342 MENVKNPIIIDQDYCD-KDKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQG 400
Query: 61 IVLEDINLVGQQGKEAKAVCNNVKLTKTGKITPRC 95
IVLE++ + G A C N + G ++P+C
Sbjct: 401 IVLENVKIKG-----GTASCKNANVKNQGTVSPKC 430
>AT2G41850.1 | polygalacturonase ADPG2-like protein |
Chr2:17461918-17464059 REVERSE LENGTH=433 | 201606
Length = 433
Score = 97.4 bits (241), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 6/95 (6%)
Query: 1 MRNVSNPIIIDQNYCDQKDPCNEQESSVHVYDVLYKNIEGTSASDVAMSFDCSKSYPCRG 60
M NV NPIIIDQ+YCD K C ++S+V V +V+Y++I GTSAS+ A++F+CSK+YPC+G
Sbjct: 342 MDNVKNPIIIDQDYCD-KSKCTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQG 400
Query: 61 IVLEDINLVGQQGKEAKAVCNNVKLTKTGKITPRC 95
IVL+ +N+ K KA C N + G + P+C
Sbjct: 401 IVLDRVNI-----KGGKATCTNANVVDKGAVLPQC 430
>AT2G43890.1 | Pectin lyase-like superfamily protein |
Chr2:18176924-18178390 FORWARD LENGTH=392 | 201606
Length = 392
Score = 94.7 bits (234), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 1 MRNVSNPIIIDQNYCDQKDPCNEQESSVHVYDVLYKNIEGTSASDVAMSFDCSKSYPCRG 60
M+NV NPII+DQNYC C +Q S V + V+Y+NI+GTS + A++FDCS+S PC+
Sbjct: 297 MKNVQNPIIVDQNYCPSNQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRSNPCQA 356
Query: 61 IVLEDINLVGQQGKEAKAVCNNVKLTKTGKITPR 94
I L DI L G+ A + C N+K K G + P+
Sbjct: 357 IRLHDIKLTF-NGRSATSTCKNIKGVKAGVVMPQ 389
>AT1G05650.1 | Pectin lyase-like superfamily protein |
Chr1:1690264-1692126 REVERSE LENGTH=394 | 201606
Length = 394
Score = 92.8 bits (229), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/93 (50%), Positives = 55/93 (59%)
Query: 1 MRNVSNPIIIDQNYCDQKDPCNEQESSVHVYDVLYKNIEGTSASDVAMSFDCSKSYPCRG 60
MRNV NPIIIDQNYC C + S V + V YKNI+GTSA+ AM CSKS PC G
Sbjct: 296 MRNVQNPIIIDQNYCPSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTG 355
Query: 61 IVLEDINLVGQQGKEAKAVCNNVKLTKTGKITP 93
I L+DI L +G A ++C N G I P
Sbjct: 356 ITLQDIKLTYNKGTPATSLCFNAVGKNLGVIQP 388