BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1760.1
(196 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01870.1 | transmembrane protein | Chr2:389846-390319 REVERSE... 88 4e-22
>AT2G01870.1 | transmembrane protein | Chr2:389846-390319 REVERSE
LENGTH=157 | 201606
Length = 157
Score = 88.2 bits (217), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%), Gaps = 7/124 (5%)
Query: 54 MRVRAAEENETELESDQIKAREALRQLDLQLQSLSTKRTTSSPKTTRVSSPILDMNAGRG 113
MR+ A E E + D+ KAREAL+QLD Q++S + ++ KT SS ++ N
Sbjct: 28 MRIVQATEREDSFQIDRDKAREALKQLDQQIESQADEKPRIINKT---SSDVVRTN---N 81
Query: 114 RDLMKEELPEFSGSFLAYSAFALLFFSIVYNIVFITVIKPSVDGPEPELAQAPTIFITNT 173
+M EE PE SGSFL SAF LL ++ YNI+FITVIKPS+DGPE + + ++ ++++
Sbjct: 82 DPIMFEEPPEISGSFLTSSAFVLLALTLFYNILFITVIKPSMDGPE-SVPEENSVAMSDS 140
Query: 174 NIMK 177
+I+K
Sbjct: 141 DIVK 144