BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1890.1
(202 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09775.1 | non-LTR retroelement reverse transcriptase | Chr4:... 49 2e-07
AT2G13980.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 3e-07
>AT4G09775.1 | non-LTR retroelement reverse transcriptase |
Chr4:6156629-6157054 FORWARD LENGTH=141 | 201606
Length = 141
Score = 48.9 bits (115), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 4 PDNNSPGEGKSWTPPGPNELKINFDAGYVDRRADIAAVC---RNSKGEFVMALVHSTSAT 60
P++ G K W+PP LK NFD+GYV R D + C R+S G ++HS A
Sbjct: 51 PNDRPSGRSKEWSPPPEGYLKCNFDSGYVQGR-DYTSTCWIIRDSNGH----VIHSGCAK 105
Query: 61 L-----ALEAEAKAALLAMKIATDLNQYICIIEGDS 91
L AL+AEA L A+++ EG++
Sbjct: 106 LQQSYSALQAEALGFLHALQMVWIRGYRYVWFEGEN 141
>AT2G13980.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:5869853-5870368 REVERSE
LENGTH=171 | 201606
Length = 171
Score = 49.3 bits (116), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 15 WTPPGPNELKINFDAGYVDRRADIAA--VCRNSKG--EFVMALVHSTSATLALEAEAKAA 70
W P +K N+DAG+ + D A + RN G + +L ++T LEAE KA
Sbjct: 13 WKAPPDTHIKCNYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTST-PLEAETKAL 71
Query: 71 LLAMKIATDLNQYI-CIIEGDS---INVVKACSSSEEDIPWKIRSTIIDIKNSKRNLTEC 126
L A++ T + Y+ I+EGD N+V SS + + + DI+ + +
Sbjct: 72 LAALQ-QTWIRGYLRVIMEGDCETLTNLVSGSSSHNH-----LANLLDDIRIWAKKFSNV 125
Query: 127 YFSFCPRNAIKVAHLLAHLNRRNNLNTPSEMVIVPECIHKYIPDD 171
FSF R KVAH LA L N+ S+ +P +H++ +D
Sbjct: 126 QFSFVRRGGNKVAHELAKLG-CNSTCFYSDSCTLPIWLHQHYCND 169