BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1940.1
(221 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01170.1 | Ribosomal protein L34e superfamily protein | Chr3:... 144 1e-42
AT5G15260.2 | ribosomal protein L34e superfamily protein | Chr5:... 129 1e-36
AT5G15260.1 | ribosomal protein L34e superfamily protein | Chr5:... 129 1e-36
AT3G06180.1 | Ribosomal protein L34e superfamily protein | Chr3:... 110 2e-29
AT5G19025.1 | Ribosomal protein L34e superfamily protein | Chr5:... 104 4e-27
>AT3G01170.1 | Ribosomal protein L34e superfamily protein |
Chr3:58043-58690 FORWARD LENGTH=215 | 201606
Length = 215
Score = 144 bits (362), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 1 MVDCRSLIEFCKAFDQHKNLGMSDNRIKNRSKKNNNYSVNPLSH-PFCDHSSPFAAVDIM 59
MV S I C + D + MS + K+R+ +N + S S P CD S AA+D++
Sbjct: 1 MVYLHSSISVCNSVDP---MIMSHSSPKSRNTRNKSSSSPTCSKFPVCDGSQS-AAIDVV 56
Query: 60 ILVVVLGALGVLIIPYFTAIFHEIRVLLPAASVLIGDVIYNGPFAYG-VGLVLTAALAIA 118
IL+ V+ A G L PY I + + S+L+ I P YG + L + A
Sbjct: 57 ILIAVITACGFLFFPYVKLITLKSIEVFSDLSLLVKQEILQNPIVYGSLALSIFCAAIST 116
Query: 119 LKEIMDHKSRKCGKPYCKGLRKAVEFDIQLESEDCVKHLPPVLEDVYGIQPLEVGQDHKE 178
I+ ++CGKP CKGLRKAVEFDIQLE+E+CVK + G+ L H+E
Sbjct: 117 WLVILLCTMQRCGKPNCKGLRKAVEFDIQLETEECVKSS----SNKRGMFELP-RVHHRE 171
Query: 179 LEAGLRKMAPPNGRTVLIFRSRCGCPLGRMEVWGPKK-VRRIKK 221
LEA L+KMAPPNGR VL+FR+RCGC + R+ V GPKK R+IKK
Sbjct: 172 LEAELKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIKK 215
>AT5G15260.2 | ribosomal protein L34e superfamily protein |
Chr5:4953646-4954350 REVERSE LENGTH=234 | 201606
Length = 234
Score = 129 bits (323), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 11/185 (5%)
Query: 47 CDHSSPFAAVDIMILVVVLGALGVLIIPYFTAIFHEIRVLLPAASVLIGDVIYNGPFAYG 106
C S AA+D++IL+ V+ + G LI PY I + + S L+ + I P
Sbjct: 51 CCDGSRSAAIDVVILIAVITSSGFLIFPYIKFITIKSVEIFSELSCLVKEEILRNPDPIV 110
Query: 107 VGLVLTA----ALAIALKEIMDHKSRKCGKPYCKGLRKA-VEFDIQLESEDCVKHLPPVL 161
GL+ + AL+ + I+ +CGKP CKGLRKA EFDIQLE+EDCVK
Sbjct: 111 YGLIALSISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKS-SNSG 169
Query: 162 EDVYGIQPLEVGQDH-KELEAGLRKMAPPNGRTVLIFRSRCGCPLGRMEVWGPKK----V 216
+ V E+ +DH +ELEA L+KMAPPNGR VL+FR++CGC +GR+EV GPKK
Sbjct: 170 KSVSKKGLFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQQLQQ 229
Query: 217 RRIKK 221
R++KK
Sbjct: 230 RKVKK 234
>AT5G15260.1 | ribosomal protein L34e superfamily protein |
Chr5:4953646-4954350 REVERSE LENGTH=234 | 201606
Length = 234
Score = 129 bits (323), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 11/185 (5%)
Query: 47 CDHSSPFAAVDIMILVVVLGALGVLIIPYFTAIFHEIRVLLPAASVLIGDVIYNGPFAYG 106
C S AA+D++IL+ V+ + G LI PY I + + S L+ + I P
Sbjct: 51 CCDGSRSAAIDVVILIAVITSSGFLIFPYIKFITIKSVEIFSELSCLVKEEILRNPDPIV 110
Query: 107 VGLVLTA----ALAIALKEIMDHKSRKCGKPYCKGLRKA-VEFDIQLESEDCVKHLPPVL 161
GL+ + AL+ + I+ +CGKP CKGLRKA EFDIQLE+EDCVK
Sbjct: 111 YGLIALSISCTALSAWMIVILLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKS-SNSG 169
Query: 162 EDVYGIQPLEVGQDH-KELEAGLRKMAPPNGRTVLIFRSRCGCPLGRMEVWGPKK----V 216
+ V E+ +DH +ELEA L+KMAPPNGR VL+FR++CGC +GR+EV GPKK
Sbjct: 170 KSVSKKGLFELPRDHHRELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQQLQQ 229
Query: 217 RRIKK 221
R++KK
Sbjct: 230 RKVKK 234
>AT3G06180.1 | Ribosomal protein L34e superfamily protein |
Chr3:1871705-1873554 FORWARD LENGTH=241 | 201606
Length = 241
Score = 110 bits (274), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 10/185 (5%)
Query: 46 FCDHSSPFAAVDIMILVVVLGALGVLIIPYFTAIFHEIRVL---LPAASVLI----GDVI 98
C HS P A +D++IL++VL + L+ YF+ +FH +L P+ S LI D+
Sbjct: 44 LCKHS-PSATLDLLILILVLFSGAFLLSSYFSYLFHSFSLLSSHFPSLSSLIFSDDEDLS 102
Query: 99 YNGPFAYGVGLVLTAALAIALKEIM-DHKSRKCGKPYCKGLRKAVEFDIQLESEDCVKH- 156
P +Y + A +IA ++ +SRKC P CKGL+KA+EFD+QL++E+CVK
Sbjct: 103 SIPPASYFFAFAVFFAASIAFLDLCCGPRSRKCRNPKCKGLKKAMEFDLQLQTEECVKSG 162
Query: 157 LPPVLEDVYGIQPLEVGQDHKELEAGLRKMAPPNGRTVLIFRSRCGCPLGRMEVWGPKKV 216
++ + E D++ L A LR+MAPPNGR VL+FRSRCGCP+ ++E WGPK+
Sbjct: 163 ATKEIDRLPWKGGSESNPDYECLRAELRRMAPPNGRAVLLFRSRCGCPVAKLEGWGPKRG 222
Query: 217 RRIKK 221
RR KK
Sbjct: 223 RRHKK 227
>AT5G19025.1 | Ribosomal protein L34e superfamily protein |
Chr5:6355220-6357083 REVERSE LENGTH=259 | 201606
Length = 259
Score = 104 bits (260), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 11/102 (10%)
Query: 126 KSRKCGKPYCKGLRKAVEFDIQLESEDCVKHLPPVLEDVYGIQPL------EVGQDHKEL 179
+SRKC P CKG++KA+EFD+QL++E+CVK V I L E D++ L
Sbjct: 149 RSRKCRNPKCKGMKKAMEFDLQLQTEECVKS-----GSVKEIDRLPWKGGSESNPDYECL 203
Query: 180 EAGLRKMAPPNGRTVLIFRSRCGCPLGRMEVWGPKKVRRIKK 221
A LRKMAP NGR VLIFRS+CGCP+ ++E WGPK+ RR KK
Sbjct: 204 RAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245