BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g1960.1
(214 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 3e-11
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 62 3e-11
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 60 1e-10
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 60 3e-10
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 55 5e-09
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 60 PRVSFLLWATFIERIPTMDLLKNRGIQLVNRCVMCKSADESINHLFIHCGIADNIWSYFI 119
PR S + W +F+ER+PT D L+ G+ + + V+C + DE+ HLF C + IW +F
Sbjct: 138 PRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFA 197
Query: 120 ESLKTQWCRPNSINDMFEQWEGIGKPKAKKVGWEVIPAAIIWNIWKNRNDKIF 172
+ P + + +++ + ++++WK RN +IF
Sbjct: 198 SKFRP--SPPFGLPAASSWILQLPLRSHSTTILKLLLQSAVYHVWKERNARIF 248
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 13/198 (6%)
Query: 17 DKRVWREEEKNKLSVKECYLLL-----------EPQEQSLSSFFTRAINRKSIPPRVSFL 65
DK +W + +V+ Y LL P S+ TR N I P++
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSID-LKTRIWNLP-IMPKLKHF 174
Query: 66 LWATFIERIPTMDLLKNRGIQLVNRCVMCKSADESINHLFIHCGIADNIWSYFIESLKTQ 125
LW + + T + L RG+++ C C +ESINH C A W SL
Sbjct: 175 LWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRN 234
Query: 126 WCRPNSINDMFEQWEGIGKPKAKKVGWEVIPAAIIWNIWKNRNDKIFKDSNDHSNLDVDD 185
N + + +++P +IW IWK RN+ +F + + V
Sbjct: 235 QLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLS 294
Query: 186 VKGTIYNWIRCVEKYKLT 203
K ++W+ + +K T
Sbjct: 295 AKAETHDWLNATQSHKKT 312
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 7/191 (3%)
Query: 3 LLEVVQGVRLGVLADKRVWREE---EKNKLSVKECYLLLEPQEQSLSSFFTRAINRKSIP 59
LL QG+ D +W+ + N+ S + L PQ ++ + +A+ K+
Sbjct: 82 LLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVP--WHKAVWFKNHV 139
Query: 60 PRVSFLLWATFIERIPTMDLLKNRGIQLVNRCVMCKSADESINHLFIHCGIADNIWSYFI 119
P+ +F+ W R+ T D L+N G+ + C++C + D+S HLF C + +W +F
Sbjct: 140 PKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFT 199
Query: 120 ESLKTQWCRPNSINDMFEQWEGIGKPKAKKVGWEVIPAAIIWNIWKNRNDKIFKDSNDHS 179
S T P + D + K + + + ++ IW+ RN ++ + +
Sbjct: 200 AS--TNLNPPAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRST 257
Query: 180 NLDVDDVKGTI 190
+ D++ I
Sbjct: 258 ESILKDIQLII 268
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 15 LADKRVWREEEKNKLSVKECYLLL--------EPQEQSLSSF--FTRAINRKSIPPRVSF 64
+ D W +VK Y +L PQE S S + I + P++
Sbjct: 209 ILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQH 268
Query: 65 LLWATFIERIPTMDLLKNRGIQLVNRCVMCKSADESINHLFIHCGIADNIW--SYFIESL 122
LW +P L R + + C+ C S E++NHL C A W S L
Sbjct: 269 FLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPL 328
Query: 123 KTQWCRPNSINDMFEQWEGIGKPKAKKVGWEVIPAAIIWNIWKNRNDKIFK 173
+W +N + G G P+ +K +++P ++W +WKNRN+ +F+
Sbjct: 329 GGEWADSIYVNLYWVFNLGNGNPQWEKAS-QLVP-WLLWRLWKNRNELVFR 377
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 54.7 bits (130), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 4 LEVVQGVRLGVLADKRVWREEEKNKLSVKECYLLLEPQEQSLSSFFTRAINRKSIPPRVS 63
+E+ + +G AD + R +E + L +L L P + + F +AI K P+ +
Sbjct: 1 MEMQMEIGIGYNADPILERNKEID-LEATATWLHLNPIGERVDWF--KAIWFKGKIPKHA 57
Query: 64 FLLWATFIERIPTMDLLKNRGIQLVNRCVMCKSADESINHLFIHCGIADNIWSYFIESLK 123
F+ W R+ T D + + G C+ C + DE+ HLF C A +W YF +
Sbjct: 58 FIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFTSRVH 117
Query: 124 TQWCRPNSINDMFEQWEGIGKPKAKKVGWEVIPAAIIWNIWKNRNDKIFKDSNDHSNLDV 183
P D + + K + A ++ IWK RN ++ ++ + +
Sbjct: 118 V--FPPLLFEDGIRWLKNPCQDKNVTTILRLSHHASVYTIWKERNARLHDSASRPAAALI 175
Query: 184 DDVKGTI 190
++K I
Sbjct: 176 LEIKSVI 182