BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2120.1
(752 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 6e-13
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 59 6e-10
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 54 2e-07
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 66.6 bits (161), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 580 NRTILNMARSMLKEKSLPREFWGEAVACAVYLLNRCPTKSVYMKTPQEAWGYYKPSVSHL 639
NRTI+ RSML E LP+ F +A AV+++N+ P+ ++ P E W P+ S+L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 640 KIFGCIAYAKIPEARRTKLDDKGEK 664
+ FGC+AY E + KGE+
Sbjct: 62 RRFGCVAYIHCDEGKLKPRAKKGEE 86
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 13/100 (13%)
Query: 393 NIQHGDAKCLNSIVKDKSWLWHLRLGHLNFDGMKALASKNMVRGLPYIDRPN----KVCE 448
+++ G++ L KD++ LWH RL H++ GM+ L K ++D K CE
Sbjct: 53 SVETGESN-LAETAKDETRLWHSRLAHMSQRGMELLVKKG------FLDSSKVSSLKFCE 105
Query: 449 GCIFGKHHRTTFSKEGRWRAYNPLELVHTDVCG-PLKPMT 487
CI+GK HR FS G+ NPL+ VH+D+ G P P++
Sbjct: 106 DCIYGKTHRVNFST-GQHTTKNPLDYVHSDLWGAPSVPLS 144
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 225 CYNCHKLGHYSNECWYNKKNEVREDANLVENDVEINVDPTLLFSCDGLDESQTNTWYFDT 284
C C+K H +C + + E + + D + P L G + W
Sbjct: 230 CGLCYKNNHNQEDCKFRIHTDKEEKEDEIVVDYRLETVPNL-----GAKTYDDDIWIIHK 284
Query: 285 GASNLICGKRELFVEVNVSVKGCVKFGDSSKIPVLGKGNILIQLKNGKHNYISDVYYVPA 344
A + + F ++ + K V D + + V GKG++ I++K GK I +V +VP
Sbjct: 285 MAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPG 344
Query: 345 MKNNILSLGQLLEKGYDI 362
+ N+LS G+++ K Y I
Sbjct: 345 LNRNVLSFGKMVSKRYSI 362
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 2 DKKVLFLIYQGIDGPTFEKVSEAKSSQEAWNILK--NSFRGVDKVVKVRLQILRGEFEKL 59
D K L ++ + F K A S+++ W++L+ N + ++ +V ++ L + E L
Sbjct: 70 DAKALQILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDL 129
Query: 60 SMNEGELISDYISRVLSNVNKMKRCGEKCDDVRVMEKILRSLTPKFDNVVIVIEESKDLE 119
M + E S Y+ + L + ++ R + D + + + +L+ FD + ++EE D+
Sbjct: 130 KMVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVH 189
Query: 120 SMTVDELT 127
MT L
Sbjct: 190 KMTSKSLV 197