BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2160.1
(761 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 145 2e-36
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 137 5e-34
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 137 5e-34
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 130 5e-31
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 102 1e-22
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 175/386 (45%), Gaps = 25/386 (6%)
Query: 381 TYPFSYQMVPKSILNKLEREERSFWWGHEIEDHKMHFIRWDIITSAKKHGGLGIRSLEQV 440
TY + ++PK++ ++ FWW ++ E MH+ WD ++ K GG+G + +E
Sbjct: 5 TYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAF 64
Query: 441 NESLIAKMVWRFLNNQNAMWVQILQAKYLNKENFLTVDKKQRSSQFWSAMLKIRDVMKSH 500
N +L+ K +WR L+ ++ ++ +++Y +K + L R S W ++ +++++
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124
Query: 501 IIWAIGNGKDISITEDPWLPEMTNHRPNIISTIP-------STISKVSDLIIQDTNQWNQ 553
+GNG+DI I WL + +P S+I KVSDLI + +W +
Sbjct: 125 ARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 554 DIIGTYFDQETITTINNIFLPHNNQGDRLIWSLTEKGNFTTKSYY---AAIKMNSDLPEE 610
D+I F + I + D W T G++T KS Y I P+E
Sbjct: 185 DVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQE 244
Query: 611 LTEFP----WEKLWKKQHMDPKIQLFIWKLIHKGLATLSNIGRRIPLIDQGCKICLSNDS 666
++E ++K+WK Q PKIQ F+WK + L + R + C C S
Sbjct: 245 VSEPSLNPIYQKIWKSQ-TSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK- 302
Query: 667 ETHVHLFGECLMFKNLIQITNDQDIKQLGQ---NPIQNLKDILNRGEGANEVWFKYT--- 720
ET HL +C F L + I G+ + NL + N G G N W K +
Sbjct: 303 ETVNHLLFKC-TFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNG-NPQWEKASQLV 360
Query: 721 -YLLWIWWKNRNENHFRNKTLDLDRI 745
+LLW WKNRNE FR + + +
Sbjct: 361 PWLLWRLWKNRNELVFRGREFNAQEV 386
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 137 bits (346), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/499 (26%), Positives = 210/499 (42%), Gaps = 44/499 (8%)
Query: 255 ISHLLFADDLILFGDANQDNLKAIIQLMEEYTGFSGQAVNFTKSSIFFGKGVPPQMQSLF 314
I+HL FADDL++F D + +++ I+Q+ ++ FSG ++ KS+I+ GV ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 315 TSQLQAPIMTDQAKYLGSFILKSGNRIDSYNWLTEKFKKSLAGWKQRLVSQAGRTVLIKS 374
+YLG +L Y L EK + + W R +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 375 VLGPYCTYPFSYQMVPKSILNKLEREERSFWWGHEIEDHKMHFIRWDIITSAKKHGGLGI 434
V+ + S +P + + +++ SF W + K + W + + K GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 435 RSLEQVNESLIAKMVWRFLNNQNAMWVQILQAKYLNKENFLTVDKKQR-SSQFWSAMLKI 493
RSL++ N+ + K++WR L++ ++WVQ L+ L K +F ++ S W +LK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 494 RDVMKSHIIWAIGNGKDISITEDPW-----LPEMTNHRPNIISTIPSTISKVSDLIIQDT 548
R + + I NG + S D W L ++T HR I I S ++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 549 NQWNQDIIGTYFDQETITTINNIFLPHNNQG-----DRLIWSLTEKGN-------FTTKS 596
+ D T+ I ++ +QG D + W KGN F TK
Sbjct: 306 RRHRHD---------TLLRIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKE 352
Query: 597 YYAAIKMNSDLPEELTEFPWEKLWKKQHMDPKIQLFIWKLIHKGLATLSNIGRRIPLIDQ 656
+AA + E + W K H PK + W I L T + D
Sbjct: 353 TWAATR------EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 657 GCKICLSNDSETHVHLFGECLMFKNLIQITNDQDIKQLGQNPIQNLKDILNRGEGANEVW 716
C +C + ET HLF C + + + Q N + + +L +EV
Sbjct: 407 SCVLC-HHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVP 465
Query: 717 F--KYTYLLWI--WWKNRN 731
F +YT+ L + WK RN
Sbjct: 466 FLTRYTFQLTLHSLWKERN 484
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 137 bits (346), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/499 (26%), Positives = 210/499 (42%), Gaps = 44/499 (8%)
Query: 255 ISHLLFADDLILFGDANQDNLKAIIQLMEEYTGFSGQAVNFTKSSIFFGKGVPPQMQSLF 314
I+HL FADDL++F D + +++ I+Q+ ++ FSG ++ KS+I+ GV ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 315 TSQLQAPIMTDQAKYLGSFILKSGNRIDSYNWLTEKFKKSLAGWKQRLVSQAGRTVLIKS 374
+YLG +L Y L EK + + W R +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 375 VLGPYCTYPFSYQMVPKSILNKLEREERSFWWGHEIEDHKMHFIRWDIITSAKKHGGLGI 434
V+ + S +P + + +++ SF W + K + W + + K GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 435 RSLEQVNESLIAKMVWRFLNNQNAMWVQILQAKYLNKENFLTVDKKQR-SSQFWSAMLKI 493
RSL++ N+ + K++WR L++ ++WVQ L+ L K +F ++ S W +LK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 494 RDVMKSHIIWAIGNGKDISITEDPW-----LPEMTNHRPNIISTIPSTISKVSDLIIQDT 548
R + + I NG + S D W L ++T HR I I S ++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 549 NQWNQDIIGTYFDQETITTINNIFLPHNNQG-----DRLIWSLTEKGN-------FTTKS 596
+ D T+ I ++ +QG D + W KGN F TK
Sbjct: 306 RRHRHD---------TLLRIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKE 352
Query: 597 YYAAIKMNSDLPEELTEFPWEKLWKKQHMDPKIQLFIWKLIHKGLATLSNIGRRIPLIDQ 656
+AA + E + W K H PK + W I L T + D
Sbjct: 353 TWAATR------EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 657 GCKICLSNDSETHVHLFGECLMFKNLIQITNDQDIKQLGQNPIQNLKDILNRGEGANEVW 716
C +C + ET HLF C + + + Q N + + +L +EV
Sbjct: 407 SCVLC-HHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVP 465
Query: 717 F--KYTYLLWI--WWKNRN 731
F +YT+ L + WK RN
Sbjct: 466 FLTRYTFQLTLHSLWKERN 484
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/440 (26%), Positives = 187/440 (42%), Gaps = 40/440 (9%)
Query: 255 ISHLLFADDLILFGDANQDNLKAIIQLMEEYTGFSGQAVNFTKSSIFFGKGVPPQMQSLF 314
I+HL FADDL++F D + +++ I+Q+ ++ FSG ++ KS+I+ GV ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 315 TSQLQAPIMTDQAKYLGSFILKSGNRIDSYNWLTEKFKKSLAGWKQRLVSQAGRTVLIKS 374
+YLG +L Y L EK + + W R +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 375 VLGPYCTYPFSYQMVPKSILNKLEREERSFWWGHEIEDHKMHFIRWDIITSAKKHGGLGI 434
V+ + S +P + + +++ SF W + K + W + + K GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 435 RSLEQVNESLIAKMVWRFLNNQNAMWVQILQAKYLNKENFLTVDKKQR-SSQFWSAMLKI 493
RSL++ N+ + K++WR L++ ++WVQ L+ L K +F ++ S W +LK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 494 RDVMKSHIIWAIGNGKDISITEDPW-----LPEMTNHRPNIISTIPSTISKVSDLIIQDT 548
R + + I NG + S D W L ++T HR I I S ++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 549 NQWNQDIIGTYFDQETITTINNIFLPHNNQG-----DRLIWSLTEKGN-------FTTKS 596
+ D T+ I ++ +QG D + W KGN F TK
Sbjct: 306 RRHRHD---------TLLRIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKE 352
Query: 597 YYAAIKMNSDLPEELTEFPWEKLWKKQHMDPKIQLFIWKLIHKGLATLSNIGRRIPLIDQ 656
+AA + E + W K H PK + W I L T + D
Sbjct: 353 TWAATR------EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 657 GCKICLSNDSETHVHLFGEC 676
C +C + ET HLF C
Sbjct: 407 SCVLC-HHLVETRDHLFFTC 425
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/427 (25%), Positives = 173/427 (40%), Gaps = 43/427 (10%)
Query: 327 AKYLGSFILKSGNRIDSYNWLTEKFKKSLAGWKQRLVSQAGRTVLIKSVLGPYCTYPFSY 386
+YLG +L Y L EK + + W R +S AGR LI SV+ + S
Sbjct: 25 VRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSA 84
Query: 387 QMVPKSILNKLEREERSFWWGHEIEDHKMHFIRWDIITSAKKHGGLGIRSLEQVNESLIA 446
+P + + +++ SF W + K + W + + K GGLGIRSL++ N+ +
Sbjct: 85 FRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLL 144
Query: 447 KMVWRFLNNQNAMWVQILQAKYLNKENFLTVDKKQR-SSQFWSAMLKIRDVMKSHIIWAI 505
K++WR L++ ++WVQ L+ L K +F ++ S W +LK R + + I
Sbjct: 145 KLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDI 203
Query: 506 GNGKDISITEDPW-----LPEMTNHRPNIISTIPSTISKVSDLIIQDTNQWNQDIIGTYF 560
NG + S D W L ++T HR I I S ++ + D
Sbjct: 204 HNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHD------ 257
Query: 561 DQETITTINNIFLPHNNQG-----DRLIWSLTEKGN-------FTTKSYYAAIKMNSDLP 608
T+ I ++ +QG D + W KGN F TK +AA +
Sbjct: 258 ---TLLRIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKETWAATR------ 304
Query: 609 EELTEFPWEKLWKKQHMDPKIQLFIWKLIHKGLATLSNIGRRIPLIDQGCKICLSNDSET 668
E + W K H PK + W I L T + D C +C + ET
Sbjct: 305 EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC-HHLVET 363
Query: 669 HVHLFGECLMFKNLIQITNDQDIKQLGQNPIQNLKDILNRGEGANEVWF--KYTYLLWI- 725
HLF C + + + Q N + + +L +EV F +YT+ L +
Sbjct: 364 RDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLH 423
Query: 726 -WWKNRN 731
WK RN
Sbjct: 424 SLWKERN 430