BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2250.1
(293 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G63780.1 | Ribosomal RNA processing Brix domain protein | Chr... 444 e-158
AT4G01560.1 | Ribosomal RNA processing Brix domain protein | Chr... 152 7e-44
>AT1G63780.1 | Ribosomal RNA processing Brix domain protein |
Chr1:23665045-23667243 REVERSE LENGTH=294 | 201606
Length = 294
Score = 444 bits (1141), Expect = e-158, Method: Compositional matrix adjust.
Identities = 203/294 (69%), Positives = 252/294 (85%), Gaps = 1/294 (0%)
Query: 1 MLRRNIRLRREYIYRKSLEGKERLLYEKKRKIKAAIEEGKPIPTELRNEEAALRAQMDFE 60
M RR +RL++EYIYRKSLEG ER +YE+KR I+ A++EGKPIPTELRN EA LR ++D E
Sbjct: 1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60
Query: 61 DEQTAIPKSDIDDEYANASQMDPKIMLTTSRDPSSPLTQFVKELNLIFPNARRMNRGGQV 120
D+ TA+P+S IDDEYANA++ DPKI+LTTSR+PS+PL +F KEL +FPN++R+NRG QV
Sbjct: 61 DQNTAVPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQV 120
Query: 121 VSEIIETCRAHDFTDVIFVHEHRGQPDGLYVCHLPFGPTAYFHLLNVVSRHDIKDKKSIG 180
+SEIIET R+HDFTDVI VHEHRG PDGL + HLPFGPTAYF LLNVV+RHDI DKKSIG
Sbjct: 121 ISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIG 180
Query: 181 TMSEAYPHLIFNNFPSKLGQRTTNILKHLFPVPKPDSKRIITFANDSDYISFRHHVYEKR 240
M E YPHLIFNNF +++GQR NILKH+FP PK D+KRI+TF+N SDYISFR+HVY+K
Sbjct: 181 KMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDYISFRNHVYDKG 240
Query: 241 D-GPKSIELKEVGPRFEMKLYKIKLGTIDNEAAQDEYVLRPYMNTSNKRKLLGD 293
+ GPKSIELKE+GPRFE++LY++KLGT++ A+ E+V+RPYMNTS KRK +G+
Sbjct: 241 EGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFIGE 294
>AT4G01560.1 | Ribosomal RNA processing Brix domain protein |
Chr4:677266-679164 REVERSE LENGTH=343 | 201606
Length = 343
Score = 152 bits (385), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 159/310 (51%), Gaps = 37/310 (11%)
Query: 9 RREYIYRKSLEGKERLLYEKKRKIKA-------AIEEG-----KPIPTELRNEEAALRAQ 56
+R +Y K K+ EK++KI+A A+E G K IP + N +
Sbjct: 44 KRSKVYAKQKHEKK---LEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDETV 100
Query: 57 MDFEDEQTAIPKSDIDDEYANA---SQMDPKIMLTTSRDPSSPLTQFVKELNLIFPNARR 113
+DE+ +DID + N ++ PK++LTT R S+ + EL + PN+
Sbjct: 101 CRPDDEELF---ADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHY 157
Query: 114 MNRGGQVVSEIIETCRAHDFTDVIFVHEHRGQPDGLYVCHLPFGPTAYFHLLNVVSRHDI 173
RG + +I+E DFT +I VH +R +PD L + LP GPTA+F L N+V R DI
Sbjct: 158 QKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDI 217
Query: 174 KDKKSIGTMSEAYPHLIFNNFPSKLGQRTTNILKHLFPVPKPD--SKRIITFANDSDYIS 231
K+ G + P L+ NNF ++LG R + LFP P P+ +R++TF N D+I
Sbjct: 218 KNH---GNPTSHQPELVLNNFTTRLGNRVGRFFQSLFP-PDPNFRGRRVVTFHNQRDFIF 273
Query: 232 FRHHVY------EKRDGPKSIELK----EVGPRFEMKLYKIKLGTIDNEAAQDEYVLRPY 281
FRHH Y K D K +K E GPRF +KL ++ GT D + + E+V +P
Sbjct: 274 FRHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPE 333
Query: 282 MNTSNKRKLL 291
M+TS +R L
Sbjct: 334 MDTSRRRFFL 343