BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2330.1
(1099 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 166 1e-41
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 166 1e-41
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 120 5e-31
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 97 2e-21
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 81 1e-15
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 111/160 (69%), Gaps = 4/160 (2%)
Query: 943 EPSTYLQASKYDHWRKAMADEIDALHKNRTWSLVSPPSHGNIVDCKWIFKIKHKADGSVQ 1002
EPSTY +A ++ W AM DEI A+ TW + + P + + CKW++KIK+ +DG+++
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 1003 RYKARLVARGYSQQHGVDYDETYSPVVRPTTIRSVISLAVSGKWPIKQLDVKNAFLHGNL 1062
RYKARLVA+GY+QQ G+D+ ET+SPV + T+++ +++++ + + QLD+ NAFL+G+L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 1063 QETVYMRQPKGFE----DPSNPNLVCKLHKALYGLKQAPR 1098
E +YM+ P G+ D PN VC L K++YGLKQA R
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASR 244
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 111/160 (69%), Gaps = 4/160 (2%)
Query: 943 EPSTYLQASKYDHWRKAMADEIDALHKNRTWSLVSPPSHGNIVDCKWIFKIKHKADGSVQ 1002
EPSTY +A ++ W AM DEI A+ TW + + P + + CKW++KIK+ +DG+++
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 1003 RYKARLVARGYSQQHGVDYDETYSPVVRPTTIRSVISLAVSGKWPIKQLDVKNAFLHGNL 1062
RYKARLVA+GY+QQ G+D+ ET+SPV + T+++ +++++ + + QLD+ NAFL+G+L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 1063 QETVYMRQPKGFE----DPSNPNLVCKLHKALYGLKQAPR 1098
E +YM+ P G+ D PN VC L K++YGLKQA R
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASR 244
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 120 bits (301), Expect = 5e-31, Method: Composition-based stats.
Identities = 56/125 (44%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 918 MITRTRDGTRKTRILLT-TPSSSMEFEPSTYLQASKYDHWRKAMADEIDALHKNRTWSLV 976
M+TR++ G K + T +++++ EP + + A K W +AM +E+DAL +N+TW LV
Sbjct: 1 MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60
Query: 977 SPPSHGNIVDCKWIFKIKHKADGSVQRYKARLVARGYSQQHGVDYDETYSPVVRPTTIRS 1036
PP + NI+ CKW+FK K +DG++ R KARLVA+G+ Q+ G+ + ETYSPVVR TIR+
Sbjct: 61 PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120
Query: 1037 VISLA 1041
++++A
Sbjct: 121 ILNVA 125
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 125/267 (46%), Gaps = 27/267 (10%)
Query: 31 ALSNIANLVSIRLD--NSNYLLWRSQLLPILHSQDLYKFVDGSYPPPAEFLPNPSVSSSS 88
+SNI + + + LD SNY WR L S D+ +DG+ P
Sbjct: 12 GVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPT------------- 58
Query: 89 SVPNPEFVFWYRIDQMLLSWLNATLT-EPVLTQVLGLPSSRAVWEALERNFSSVNSARLM 147
N V W + D ++ L TLT + + +SR +W ++ F + AR +
Sbjct: 59 ---NANDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARAL 115
Query: 148 NLKLQLQTQKKGSLNISDYLLRIKSISDSLAAIGHPIADSELVLIVLSGLGSDYENFVTS 207
L +L+T+ G + ++DY ++K ++DSL + P+ D LV+ VL+GL ++N +
Sbjct: 116 RLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINV 175
Query: 208 ITTRLVAPSYAELHSLLLTHEFRIDLLRQQSVQPT-TLFSHNPSSHSRSSHQ--PAQRGH 264
I R PS+ + ++L E R+ +++++P T H+ SS + + P
Sbjct: 176 IKHRQPFPSFDDAATMLQEEEDRL----KRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQ 231
Query: 265 RGRGNRGGYRG-NRGHTSNRGYSNRIS 290
R GN+ GYRG RG+ RG R S
Sbjct: 232 RSGGNQMGYRGRGRGNNIFRGRGGRFS 258
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 22/270 (8%)
Query: 38 LVSIRLDNSNYLLWRSQLLPILHSQDLYKFVDGSYPPPAEFLPNPSVSSSSSVPNPEFVF 97
V++ L+ NY +WR + S + +DGS S+ P E
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS---------------STPTPMTE-KR 66
Query: 98 WYRIDQMLLSWLNATLTEPVLTQVLGLP-SSRAVWEALERNFSSVNSARLMNLKLQLQTQ 156
W D ++ W+ T+T+ +L ++ + ++R +W +LE F AR + + +L+T
Sbjct: 67 WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTT 126
Query: 157 KKGSLNISDYLLRIKSISDSLAAIGHPIADSELVLIVLSGLGSDYENFVTSITTRLVAPS 216
L++ +Y ++KS+SD L + PI+D LV+ +L+GL Y+ + I + PS
Sbjct: 127 TIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 186
Query: 217 YAELHSLLLTHEFRIDLLRQQSVQPTT--LFSHNPSSHSRSSHQPAQRGHRGRGNRGGYR 274
+ E S+LL E R+ + S+ T S+ + R + Q H N G R
Sbjct: 187 FTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGRGR 246
Query: 275 G---NRGHTSNRGYSNRISSSVLGPPPQII 301
NRG S+ G N ++ L PP I
Sbjct: 247 SKKKNRGGGSSDGRYNNNNNWRLNQPPTWI 276