BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2390.1
(1725 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 353 e-102
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 353 e-102
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 224 5e-66
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 91 4e-21
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 82 8e-16
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 353 bits (907), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/555 (37%), Positives = 307/555 (55%), Gaps = 66/555 (11%)
Query: 1094 PSISI--DTPSLADVNTHPMKTRLKSGIVKPKTIPDH----VAHFSIPHALSFVSHTSVP 1147
PS +I D P V+T +TR KP + D+ VA +I F+S+ V
Sbjct: 18 PSANIQNDVPE-PSVHTSHRRTR------KPAYLQDYYCHSVASLTIHDISQFLSYEKVS 70
Query: 1148 SII-----------EPTSYKEASKSKQWQQAMQEEFHALLKNKTWSL------------- 1183
+ EP++Y EA + W AM +E A+ TW +
Sbjct: 71 PLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCK 130
Query: 1184 ----VPKTSD--------------------MNVLETFSPVVKIQSVRVVLALAVAKHWPI 1219
+ SD ++ +ETFSPV K+ SV+++LA++ ++ +
Sbjct: 131 WVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTL 190
Query: 1220 HQLDVSNAFLRGLLTETVFMKQPQGFA----DPHNPDFVCHLHKALYGLKQAPRAWFNRI 1275
HQLD+SNAFL G L E ++MK P G+A D P+ VC+L K++YGLKQA R WF +
Sbjct: 191 HQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKF 250
Query: 1276 ATYLQNWGFLKSASDTSMFIFQQDNHMMVLLLYVDDIILTGTSLSLLDQLFTDLAAEFAM 1335
+ L +GF++S SD + F+ + +L+YVDDII+ + + +D+L + L + F +
Sbjct: 251 SVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKL 310
Query: 1336 KRLGDLHYFLGIEVNRVSSSLVLTQAKYVCELLEKAGLSDSKPSLVPVPVGKRLSKHDGE 1395
+ LG L YFLG+E+ R ++ + + Q KY +LL++ GL KPS VP+ S H G
Sbjct: 311 RDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGG 370
Query: 1396 LISNVVFYRSMVGGLQYATMTRPDLTFSVNYLSQFMQEPRTSHLVLLKKVLRYLKGTLGA 1455
+ YR ++G L Y +TR D++F+VN LSQF + PR +H + K+L Y+KGT+G
Sbjct: 371 DFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQ 430
Query: 1456 GISIQPGDCSILTAYSDSDWGGCPDTRRSTSGYCVFLGSTLVSWSSKKQATVSRSSTEAE 1515
G+ L +SD+ + C DTRRST+GYC+FLG++L+SW SKKQ VS+SS EAE
Sbjct: 431 GLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAE 490
Query: 1516 YRALSLATSELLWLSYLLEDLGVSVHTPFPLSCDNMGARFLASNPVFHARTKHIEIDYHF 1575
YRALS AT E++WL+ +L + + P L CDN A +A+N VFH RTKHIE D H
Sbjct: 491 YRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHS 550
Query: 1576 IRDL-VLSSTLRICF 1589
+R+ V +TL F
Sbjct: 551 VRERSVYQATLSYSF 565
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 353 bits (907), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/555 (37%), Positives = 307/555 (55%), Gaps = 66/555 (11%)
Query: 1094 PSISI--DTPSLADVNTHPMKTRLKSGIVKPKTIPDH----VAHFSIPHALSFVSHTSVP 1147
PS +I D P V+T +TR KP + D+ VA +I F+S+ V
Sbjct: 18 PSANIQNDVPE-PSVHTSHRRTR------KPAYLQDYYCHSVASLTIHDISQFLSYEKVS 70
Query: 1148 SII-----------EPTSYKEASKSKQWQQAMQEEFHALLKNKTWSL------------- 1183
+ EP++Y EA + W AM +E A+ TW +
Sbjct: 71 PLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCK 130
Query: 1184 ----VPKTSD--------------------MNVLETFSPVVKIQSVRVVLALAVAKHWPI 1219
+ SD ++ +ETFSPV K+ SV+++LA++ ++ +
Sbjct: 131 WVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTL 190
Query: 1220 HQLDVSNAFLRGLLTETVFMKQPQGFA----DPHNPDFVCHLHKALYGLKQAPRAWFNRI 1275
HQLD+SNAFL G L E ++MK P G+A D P+ VC+L K++YGLKQA R WF +
Sbjct: 191 HQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKF 250
Query: 1276 ATYLQNWGFLKSASDTSMFIFQQDNHMMVLLLYVDDIILTGTSLSLLDQLFTDLAAEFAM 1335
+ L +GF++S SD + F+ + +L+YVDDII+ + + +D+L + L + F +
Sbjct: 251 SVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKL 310
Query: 1336 KRLGDLHYFLGIEVNRVSSSLVLTQAKYVCELLEKAGLSDSKPSLVPVPVGKRLSKHDGE 1395
+ LG L YFLG+E+ R ++ + + Q KY +LL++ GL KPS VP+ S H G
Sbjct: 311 RDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGG 370
Query: 1396 LISNVVFYRSMVGGLQYATMTRPDLTFSVNYLSQFMQEPRTSHLVLLKKVLRYLKGTLGA 1455
+ YR ++G L Y +TR D++F+VN LSQF + PR +H + K+L Y+KGT+G
Sbjct: 371 DFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQ 430
Query: 1456 GISIQPGDCSILTAYSDSDWGGCPDTRRSTSGYCVFLGSTLVSWSSKKQATVSRSSTEAE 1515
G+ L +SD+ + C DTRRST+GYC+FLG++L+SW SKKQ VS+SS EAE
Sbjct: 431 GLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAE 490
Query: 1516 YRALSLATSELLWLSYLLEDLGVSVHTPFPLSCDNMGARFLASNPVFHARTKHIEIDYHF 1575
YRALS AT E++WL+ +L + + P L CDN A +A+N VFH RTKHIE D H
Sbjct: 491 YRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHS 550
Query: 1576 IRDL-VLSSTLRICF 1589
+R+ V +TL F
Sbjct: 551 VRERSVYQATLSYSF 565
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 224 bits (570), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 153/228 (67%), Gaps = 1/228 (0%)
Query: 1303 MVLLLYVDDIILTGTSLSLLDQLFTDLAAEFAMKRLGDLHYFLGIEVNRVSSSLVLTQAK 1362
M LLLYVDDI+LTG+S +LL+ L L++ F+MK LG +HYFLGI++ S L L+Q K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1363 YVCELLEKAGLSDSKPSLVPVPVGKRLSKHDGELISNVVFYRSMVGGLQYATMTRPDLTF 1422
Y ++L AG+ D KP P+P+ S + F RS+VG LQY T+TRPD+++
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDF-RSIVGALQYLTLTRPDISY 119
Query: 1423 SVNYLSQFMQEPRTSHLVLLKKVLRYLKGTLGAGISIQPGDCSILTAYSDSDWGGCPDTR 1482
+VN + Q M EP + LLK+VLRY+KGT+ G+ I + A+ DSDW GC TR
Sbjct: 120 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 179
Query: 1483 RSTSGYCVFLGSTLVSWSSKKQATVSRSSTEAEYRALSLATSELLWLS 1530
RST+G+C FLG ++SWS+K+Q TVSRSSTE EYRAL+L +EL W S
Sbjct: 180 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 90.9 bits (224), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 53/78 (67%)
Query: 1412 YATMTRPDLTFSVNYLSQFMQEPRTSHLVLLKKVLRYLKGTLGAGISIQPGDCSILTAYS 1471
Y T+TRPDLTF+VN LSQF RT+ + + KVL Y+KGT+G G+ L A++
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 1472 DSDWGGCPDTRRSTSGYC 1489
DSDW CPDTRRS +G+C
Sbjct: 62 DSDWASCPDTRRSVTGFC 79
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 237 FKFHGLIINGSNFLVWKDQVENALIGNDLVCYIDGTYSEPPQLIVEEGRVIANPAYLQWR 296
+ F L +N N+ VW++ E + ++ +IDG S P + E+ +W+
Sbjct: 21 YIFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDG--SSTPTPMTEK----------RWK 68
Query: 297 KTDSFVKSCIKATITHSIASDILGLK-TSREIWCYLEMVFLQEFEAQKSSLRNKLQNIKK 355
+ D VK I TIT S+ I+ + T+R++W LE +F EA+ N+L+
Sbjct: 69 ERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTI 128
Query: 356 GSSSISEYLSKIKNLADSLVAVNDKVSEPELTRIVLQGLGKEYSQFVITVQNRDGLLSFG 415
S+ EY K+K+L+D L V+ +S+ L +L GL ++Y + ++++ SF
Sbjct: 129 DDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFT 188
Query: 416 ELRSRLTHHE 425
E RS L E
Sbjct: 189 EARSMLLMEE 198