BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2420.1
(232 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08010.1 | RNA binding protein | Chr3:2556046-2557426 FORWARD... 401 e-141
>AT3G08010.1 | RNA binding protein | Chr3:2556046-2557426 FORWARD
LENGTH=374 | 201606
Length = 374
Score = 401 bits (1030), Expect = e-141, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 214/234 (91%), Gaps = 2/234 (0%)
Query: 1 MVSISENLGVPLPEKIRFFRLQMQTIITKACRELGIKPIPSKRCLSLQLWLEERYETVYT 60
+V+I+++LGVPLPEKIRFFR QMQTIITKAC+EL IK +PSKRCLSL LWL+ERY+TVYT
Sbjct: 141 IVTITQDLGVPLPEKIRFFRSQMQTIITKACKELAIKAVPSKRCLSLFLWLQERYDTVYT 200
Query: 61 RHPGFKEGAKPLLSLDNPFPMELPENLFGEKWAFVQLPYSAVQEEASSLETKF--GANLD 118
RHPGF++G+ PLLSLDNPFPM LPENLFGEKWAFVQLPYSAV+EE S + KF GA+LD
Sbjct: 201 RHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWAFVQLPYSAVREEISDFDEKFVFGASLD 260
Query: 119 LDLLGIDIDEKTLIPGLSVATSRAKPLAAWMNGMEVCSVEADTARACLILSVGISTRYVY 178
LDLLGI++DE TLIPGLSVATSRAKPLAAWMNG+EVCS+EAD+++ CLILSVGI+TRYVY
Sbjct: 261 LDLLGIEVDENTLIPGLSVATSRAKPLAAWMNGLEVCSIEADSSKGCLILSVGIATRYVY 320
Query: 179 ATYKKTSTTTKESEAWEAAKKACGGLHFLAIQESLDSDDCVGFWLLLDLPPPPV 232
ATYKKT TT E+EAWE+AKK GGLHFLAIQ+ LDSDDCVGFWLL+DLPPPPV
Sbjct: 321 ATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQDDLDSDDCVGFWLLIDLPPPPV 374