BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2450.1
(118 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52070.2 | RNA/RNP complex-1-interacting phosphatase | Chr3:1... 63 8e-14
AT3G52070.1 | RNA/RNP complex-1-interacting phosphatase | Chr3:1... 62 1e-13
>AT3G52070.2 | RNA/RNP complex-1-interacting phosphatase |
Chr3:19312753-19313260 FORWARD LENGTH=113 | 201606
Length = 113
Score = 63.2 bits (152), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 54 KENKQLVSRIFVGIETIGRRMKENLSP-KQKGDWKDIMLMCLSFAVYVYISEKLVCAYCV 112
+EN+ ++ R + + ++ +NL P K+KGD KD+MLM LSFAVYVYIS+ LVCAY
Sbjct: 44 EENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLLVCAYFS 103
Query: 113 WKSM 116
W+ +
Sbjct: 104 WQHL 107
>AT3G52070.1 | RNA/RNP complex-1-interacting phosphatase |
Chr3:19312753-19313097 FORWARD LENGTH=114 | 201606
Length = 114
Score = 62.4 bits (150), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 54 KENKQLVSRIFVGIETIGRRMKENLSP-KQKGDWKDIMLMCLSFAVYVYISEKLVCAYCV 112
+EN+ ++ R + + ++ +NL P K+KGD KD+MLM LSFAVYVYIS+ LVCAY
Sbjct: 44 EENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLLVCAYFS 103
Query: 113 WKSM 116
W+ +
Sbjct: 104 WQHL 107