BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2460.1
(201 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 53 3e-08
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 51 1e-07
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 3e-07
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 50 4e-07
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 50 4e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 21 IKSFPEKPIDKIKINPPKATKWKPPNAPYIKINVDASFTTSADNAGIGVIVHN--ADSKF 78
I++ E K ++N +W+PP ++K N DA++ + GIG ++ N + K+
Sbjct: 399 IRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKW 458
Query: 79 MGAFASMDRVRNSEEGEAIAILKGLIWAEENKHNNIIIESDNINLINHLKDRRKAIHWFS 138
MGA A + ++++ E E A+ ++ ++N +I ESD+ LI L + W S
Sbjct: 459 MGARA-LPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEI---WPS 514
Query: 139 -SFHIKKIREAMSRVGNVQLSYTNRLLNDKADKLAK 173
I+ ++ +S+ V+ + R N A+++A+
Sbjct: 515 LKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 19/172 (11%)
Query: 35 NPPKATKWKPPNAPYIKINVDASFTTSADNAGIGVIVHNADSKF----MGAFASMDRVRN 90
+P + TKW PP +K N DAS +G+G I+ N+ MG F
Sbjct: 98 DPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGR---MT 154
Query: 91 SEEGEAIAILKGLIWAEENKHNNIIIESDN---INLINHLKDRRKAIHWFSSFHIKKIRE 147
+EE E ++ + + H +I E DN +IN + H+ + I+
Sbjct: 155 TEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDT-----IQS 209
Query: 148 AMSRVGNVQLSYTNRLLNDKADKLAKWARKHKKSKSWTVVPS--FFINLYCN 197
+ +++ S+ +R N AD LAK A K++ W++ S +F++ Y N
Sbjct: 210 WIPSFESIEFSFKHREQNGCADFLAKQAI--KENTQWSLFHSCPYFLSPYVN 259
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 39 ATKWKPPNAPYIKINVDASFTTSADNAGIGVIVHNADSK--FMGAFASMDRVRNSEEGEA 96
+ +WK P ++K N DA++ GIG I+ N +MGA A + R +N E E
Sbjct: 134 SVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARA-LPRTKNVLEAEL 192
Query: 97 IAILKGLIWAEENKHNNIIIESDNINLINHLKDRRKAIHWFSSFH--IKKIREAMSRVGN 154
A+ ++ + II ESD L+N L + ++ + ++ I++ +
Sbjct: 193 EALRWAVLTMSRFNYKRIIFESDAQALVNLL----NSDDFWPTLQPALEDIQQLLHHFEE 248
Query: 155 VQLSYTNRLLNDKADKLAK 173
V+ +T R N AD++A+
Sbjct: 249 VKFEFTPRGGNKVADRIAR 267
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 42 WKPPNAPYIKINVDASFTTSADNAGIGVIV--HNADSKFMGAFASMDRVRNSEEGEAIAI 99
W+ P ++K NVD SF G IV HN +F G A + + N+ E E A+
Sbjct: 503 WRRPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNGRYEFAGQ-AIGNCIDNALECEFQAL 561
Query: 100 LKGLIWAEENKHNNIIIESDN---INLINHLKDRRKAIHWFSSFHIKKIREAMSRVGNVQ 156
L + + I E DN +LIN LK A +W I+ I S+ Q
Sbjct: 562 LMAMQHCWSKGYRRICFEGDNKEMFDLINGLKMHFGAFNW-----IRDILWWASKFEQTQ 616
Query: 157 LSYTNRLLNDKADKLAKWARKHK 179
+TNR N AD LA+ +H+
Sbjct: 617 FQWTNRQNNKPADILARTPLQHQ 639
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 39 ATKWKPPNAPYIKINVDASFTTSADNAGIGVIVHNADSKF-MGAFASMDRVRNSEEGEAI 97
+++W PP ++K N D+ +T + G + + + A + S EA+
Sbjct: 203 SSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEAL 262
Query: 98 AILKGL--IWAEENKHNNIIIESDN---INLINHLKDRRKAIHWFSSFHIKKIREAMSRV 152
L L IWA ++ + ESD+ + LIN+ +D H I IR M ++
Sbjct: 263 GFLHALQVIWAHGLRY--VWFESDSKSLVTLINNGED-----HSLLGTLIYDIRHWMLKL 315
Query: 153 GNVQLSYTNRLLNDKADKLAKWARKHKKS---KSWTVVPSFFIN 193
L + NR N AD LA + H + +S+T PS+ +N
Sbjct: 316 PYCSLEFVNRERNSAADALA--SHVHARDPLFQSYTTPPSWLVN 357