BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2470.1
(369 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 139 3e-36
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 99 2e-22
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 99 3e-22
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 99 3e-22
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 93 3e-20
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 139 bits (349), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 161/319 (50%), Gaps = 31/319 (9%)
Query: 66 AVPRYQMQCFALPKSVSKCIMTLQKSFWW---GKSKGICTKAWNSICLPKKEGGLGLHLP 122
A+P Y M CF LPK+V K I+++ FWW ++KG+ KAW+ + K EGG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 123 ELDNKAFLSKLAWRLRTEPNAAWVQLLKAKYYPNSD---RPGRVKPHNSWIWKNINKYND 179
E N A L K WR+ + P + ++ K++Y+ SD P +P S++WK+I+ +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRP--SFVWKSIHASQE 119
Query: 180 QVNDLSCWETHSGNDINIWTDKWIPTFSS---------PPQNSFN-SNLTKVSQLI--TN 227
+ + +G DI IW KW+ + + PPQ + S++ KVS LI +
Sbjct: 120 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179
Query: 228 DTWNEHILIENFDENTRNMIKTI-PIDSNGRDQLKWNLTNSGNFTIKSMYYHLRN----- 281
W + ++ F E R +I + P D W+ T+SG++T+KS Y+ L
Sbjct: 180 REWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 282 ---HNSDNPTNNHNWKFIWEIPSIPRIQLFIWKICTKALPVKNRIG-KFIGNDLLCPKC- 336
P+ N ++ IW+ + P+IQ F+WK + +LPV + + + + C +C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 337 AVPETMEHALLHCRWQKIS 355
+ ET+ H L C + +++
Sbjct: 300 SCKETVNHLLFKCTFARLT 318
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 98.6 bits (244), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 42/379 (11%)
Query: 16 KYLGAQLFIGATKTKVFNDLIEQVKKKLNTWNHSFLSQAGRTVVISAVAAAVPRYQMQCF 75
+YLG L T + L+E+++ ++ W LS AGR +IS+V ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 76 ALPKSVSKCIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGLGLHLPELDNKAFLSK 132
LP + K I ++ SF W + K AW+ +C PK EGGLG+ + NK L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 133 LAWRLRTEPNAAWVQ------LLKAKYYPNSDRPGRVKPHNSWIWKNINKYNDQVNDLSC 186
L WR+ + + WVQ L K ++ S SW+WK I K+ +
Sbjct: 146 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASGFVK 200
Query: 187 WETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQLITNDTWNEH-----I 234
+ H+G++ + W D W + + + +T V++ + N H +
Sbjct: 201 HDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLL 260
Query: 235 LIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHLRN--HNSDNPTNNHN 292
IE+ R+ T +G D ++W GN I ++ + + P N
Sbjct: 261 RIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNTKETWAATREPKLKVN 311
Query: 293 W-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPKC-AVPETMEHALLHC 349
W K +W + P+ + W L +R+ + G D C C + ET +H C
Sbjct: 312 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 371
Query: 350 RWQKISGSTLMSSRRILAQ 368
+ STL +R++L+Q
Sbjct: 372 PYSAEVWSTL--TRKLLSQ 388
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 98.6 bits (244), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 42/379 (11%)
Query: 16 KYLGAQLFIGATKTKVFNDLIEQVKKKLNTWNHSFLSQAGRTVVISAVAAAVPRYQMQCF 75
+YLG L T + L+E+++ ++ W LS AGR +IS+V ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 ALPKSVSKCIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGLGLHLPELDNKAFLSK 132
LP + K I ++ SF W + K AW+ +C PK EGGLG+ + NK L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LAWRLRTEPNAAWVQ------LLKAKYYPNSDRPGRVKPHNSWIWKNINKYNDQVNDLSC 186
L WR+ + + WVQ L K ++ S SW+WK I K+ +
Sbjct: 200 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASGFVK 254
Query: 187 WETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQLITNDTWNEH-----I 234
+ H+G++ + W D W + + + +T V++ + N H +
Sbjct: 255 HDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLL 314
Query: 235 LIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHLRN--HNSDNPTNNHN 292
IE+ R+ T +G D ++W GN I ++ + + P N
Sbjct: 315 RIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNTKETWAATREPKLKVN 365
Query: 293 W-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPKC-AVPETMEHALLHC 349
W K +W + P+ + W L +R+ + G D C C + ET +H C
Sbjct: 366 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 425
Query: 350 RWQKISGSTLMSSRRILAQ 368
+ STL +R++L+Q
Sbjct: 426 PYSAEVWSTL--TRKLLSQ 442
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 98.6 bits (244), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 42/379 (11%)
Query: 16 KYLGAQLFIGATKTKVFNDLIEQVKKKLNTWNHSFLSQAGRTVVISAVAAAVPRYQMQCF 75
+YLG L T + L+E+++ ++ W LS AGR +IS+V ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 ALPKSVSKCIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGLGLHLPELDNKAFLSK 132
LP + K I ++ SF W + K AW+ +C PK EGGLG+ + NK L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LAWRLRTEPNAAWVQ------LLKAKYYPNSDRPGRVKPHNSWIWKNINKYNDQVNDLSC 186
L WR+ + + WVQ L K ++ S SW+WK I K+ +
Sbjct: 200 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASGFVK 254
Query: 187 WETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQLITNDTWNEH-----I 234
+ H+G++ + W D W + + + +T V++ + N H +
Sbjct: 255 HDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLL 314
Query: 235 LIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHLRN--HNSDNPTNNHN 292
IE+ R+ T +G D ++W GN I ++ + + P N
Sbjct: 315 RIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNTKETWAATREPKLKVN 365
Query: 293 W-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPKC-AVPETMEHALLHC 349
W K +W + P+ + W L +R+ + G D C C + ET +H C
Sbjct: 366 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 425
Query: 350 RWQKISGSTLMSSRRILAQ 368
+ STL +R++L+Q
Sbjct: 426 PYSAEVWSTL--TRKLLSQ 442
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 92.8 bits (229), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 151/360 (41%), Gaps = 40/360 (11%)
Query: 16 KYLGAQLFIGATKTKVFNDLIEQVKKKLNTWNHSFLSQAGRTVVISAVAAAVPRYQMQCF 75
+YLG L T + L+E+++ ++ W LS AGR +IS+V ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 ALPKSVSKCIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGLGLHLPELDNKAFLSK 132
LP + K I ++ SF W + K AW+ +C PK EGGLG+ + NK L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LAWRLRTEPNAAWVQ------LLKAKYYPNSDRPGRVKPHNSWIWKNINKYNDQVNDLSC 186
L WR+ + + WVQ L K ++ S SW+WK I K+ +
Sbjct: 200 LIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASGFVK 254
Query: 187 WETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQLITNDTWNEH-----I 234
+ H+G++ + W D W + + + +T V++ + N H +
Sbjct: 255 HDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLL 314
Query: 235 LIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHLRN--HNSDNPTNNHN 292
IE+ R+ T +G D ++W GN I ++ + + P N
Sbjct: 315 RIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNTKETWAATREPKLKVN 365
Query: 293 W-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPKC-AVPETMEHALLHC 349
W K +W + P+ + W L +R+ + G D C C + ET +H C
Sbjct: 366 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 425