BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2550.1
(189 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19940.1 | F-box and associated interaction domains-containin... 49 5e-07
AT4G19930.1 | F-box and associated interaction domains-containin... 45 2e-05
>AT4G19940.1 | F-box and associated interaction domains-containing
protein | Chr4:10806195-10807430 FORWARD LENGTH=411 |
201606
Length = 411
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 60 ISKSVNGLTCLIDSYREHAARICNISTGQ--VSPWFEASSIALGKEYIGLPNHYAFGFDP 117
IS GL CL+ ++ +A+I N +T Q V P E S+I L +E+ Y G DP
Sbjct: 132 ISHVFRGLMCLV---KKSSAQIYNTTTRQLVVLPDIEESTI-LAEEHKSKKIMYHIGHDP 187
Query: 118 ATNEHKLVCVLRIKSDFPNFEYNLCG---VLTIGRQSSNRWRKIE-EVPPCLLNDDYVYV 173
+++K+VC++ SD EY VL + + S RWRKI + PP + + +
Sbjct: 188 VYDQYKVVCIVSRASDEVE-EYTFLSEHWVLLLEGEGSRRWRKISCKYPPHVPLGQGLTL 246
Query: 174 NGVIYWL 180
+G +++L
Sbjct: 247 SGRMHYL 253
>AT4G19930.1 | F-box and associated interaction domains-containing
protein | Chr4:10803558-10804853 FORWARD LENGTH=431 |
201606
Length = 431
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 60 ISKSVNGLTCLIDSYREHAARICNISTGQ--VSPWFEASSIALGKEYIGLPNHYAFGFDP 117
+S + GL C + +E + +I N +T Q V P E S+I + +++ Y G DP
Sbjct: 143 LSHVLRGLMCFV---KEPSVKIYNTTTRQLVVLPDIEESNI-IAEDHKNKKIMYRIGHDP 198
Query: 118 ATNEHKLVCVL-RIKSDFPNFEYNLCG--VLTIGRQSSNRWRKIEEVPPCLLNDDYVYVN 174
+++K+VC++ R +F L V +G S+ WRKI P L + +N
Sbjct: 199 VGDQYKVVCIVARPNDEFGELRRYLSEHWVFILGGDKSSGWRKIPCPSPHLPITQILSIN 258
Query: 175 GVIYWL 180
G +++L
Sbjct: 259 GRMHYL 264