BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2610.1
(109 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51400.1 | Photosystem II 5 kD protein | Chr1:19052172-190524... 89 4e-24
AT3G21055.2 | photosystem II subunit T | Chr3:7376761-7377192 RE... 72 5e-17
AT3G21055.1 | photosystem II subunit T | Chr3:7376761-7377072 RE... 70 6e-17
>AT1G51400.1 | Photosystem II 5 kD protein | Chr1:19052172-19052492
REVERSE LENGTH=106 | 201606
Length = 106
Score = 89.0 bits (219), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 77/112 (68%), Gaps = 9/112 (8%)
Query: 1 MASIAMSTTSLVVSGVSPSGRTPSVNTRRGLVIVKASGASEVDLSCETK-QEKSCG-RRS 58
MAS+ M+++ L P+ S N+RR L +VKASG SE S E K QE+S RR
Sbjct: 1 MASMTMTSSFLPTVSNLPANI--SSNSRRSLTVVKASG-SENTTSLENKKQEQSMKMRRD 57
Query: 59 LVSTAAAIAAAAACSVASIALAD-EPKRGSEEAKKKYAAVCVTMPTARICRN 109
LV TAAA AA CS+A +A+AD EPKRG+E AKKKYA VCVTMPTA+ICRN
Sbjct: 58 LVFTAAA---AAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICRN 106
>AT3G21055.2 | photosystem II subunit T | Chr3:7376761-7377192
REVERSE LENGTH=143 | 201606
Length = 143
Score = 71.6 bits (174), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 5 AMSTTSLVVSGVSPSGRTPSVNTRRGLVIVKASGASEVDLSCETKQEKSCG-RRSLVSTA 63
AM++ ++ + + PS R L +V+AS S+ S E K++ S RR L+ TA
Sbjct: 40 AMASMTMTATFFPAVAKVPSATGGRRLSVVRAS-TSDNTPSLEVKEQSSTTMRRDLMFTA 98
Query: 64 AAIAAAAACSVASIALADE--PKRGSEEAKKKYAAVCVTMPTARICR 108
AA AA CS+A +A+A+E PKRG+E AKKKYA VCVTMPTA+ICR
Sbjct: 99 AA---AAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 142
>AT3G21055.1 | photosystem II subunit T | Chr3:7376761-7377072
REVERSE LENGTH=103 | 201606
Length = 103
Score = 70.5 bits (171), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 71/112 (63%), Gaps = 14/112 (12%)
Query: 1 MASIAMSTTSLVVSGVSPS-GRTPSVNTRRGLVIVKASGASEVDLSCETKQEKSCG-RRS 58
MAS+ M+ T P+ + PS R L +V+AS S+ S E K++ S RR
Sbjct: 1 MASMTMTATFF------PAVAKVPSATGGRRLSVVRAS-TSDNTPSLEVKEQSSTTMRRD 53
Query: 59 LVSTAAAIAAAAACSVASIALADE--PKRGSEEAKKKYAAVCVTMPTARICR 108
L+ TAAA AA CS+A +A+A+E PKRG+E AKKKYA VCVTMPTA+ICR
Sbjct: 54 LMFTAAA---AAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102