BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2670.1
(240 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 82 5e-18
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 62 2e-11
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 61 8e-11
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 82.4 bits (202), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 17 IIPIKLQSDNYLTWRSLFLPILKKYKVLDLIDGSR-PQPDQYLDSERRQLNPAYTEWLEE 75
+ + L NY WR LF + + VL IDGS P P +E+R W E
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPM----TEKR--------WKER 70
Query: 76 DQTLLIWINSTLSESVIPYVVG-NTSSLELWRNLEDSFASASTAHIFQLQENLRDLKKEN 134
D + +WI T+++S++ ++ ++ +LW +LE+ F A Q + LR ++
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 135 DKMPDFLTKVKRISESLAAAGSPASSAELVVSILRALPSDYDLFSAAIRLRKPPVTITEL 194
+ ++ K+K +S+ L SP S LV+ +L L YD I+ + P + TE
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 195 QNLLISEEITISERQKRSLNNINQ-----VLFTNPPPYNRYAQGRSTN 237
+++L+ EE +S + K SL++ N VLFT P RY Q N
Sbjct: 191 RSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNN 238
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 25 DNYLTWRSLFLPILKKYKVLDLIDGSRPQPDQYLDSERRQLNPAYTEWLEEDQTLLIWIN 84
DNY+ W+ F L+ K IDG+ P+PD + +P Y W + + ++ W+
Sbjct: 40 DNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF--------SPLYQPWEQCNAMVMYWLM 91
Query: 85 STLSESVIPYVVGNTSSLELWRNLEDSFASASTAHIFQLQENLRDLKKENDKMPDFLTKV 144
+++++ ++ V+ ++ ++W +L F I+QL+ L L++ D + ++ K+
Sbjct: 92 NSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKL 151
Query: 145 KRI 147
++
Sbjct: 152 SKV 154
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 61.2 bits (147), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 10 AITSMSNIIPIKL--QSDNYLTWRSLFLPILKKYKVLDLIDGSRPQPDQYLDSERRQLNP 67
++++ + IP+ L + NY WR LFL + V+ IDG+ L + +N
Sbjct: 12 GVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------LLPTNANDVN- 64
Query: 68 AYTEWLEEDQTLLIWINSTLS-ESVIPYVVGNTSSLELWRNLEDSFASASTAHIFQLQEN 126
W + D + + + TL+ + V +++S ++W +++ F + A +L
Sbjct: 65 ----WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSE 120
Query: 127 LRDLKKENDKMPDFLTKVKRISESLAAAGSPASSAELVVSILRALPSDYDLFSAAIRLRK 186
LR + ++ D+ K+K++++SL P + LV+ +L L +D I+ R+
Sbjct: 121 LRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQ 180
Query: 187 PPVTITELQNLLISEEITISERQKRSL 213
P + + +L EE +R KR++
Sbjct: 181 PFPSFDDAATMLQEEE----DRLKRAI 203