BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2770.1
(153 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00270.1 | NADH dehydrogenase 6 | ChrM:76642-77259 REVERSE LE... 49 3e-07
>ATMG00270.1 | NADH dehydrogenase 6 | ChrM:76642-77259 REVERSE
LENGTH=205 | 201606
Length = 205
Score = 48.5 bits (114), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 38/57 (66%)
Query: 17 IPVFRDTSGLLLLLGLDFSAMISPVVHIGAIAVSECVLCHQGGESIKRLFSECPRLI 73
IPVFRDTSGLLLLLGLDF AMI PVVHIGAIAVS + I + E R +
Sbjct: 31 IPVFRDTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYL 87