BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g2890.1
(230 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G57080.1 | Eukaryotic rpb5 RNA polymerase subunit family prot... 251 9e-85
AT3G54490.1 | RNA polymerase II fifth largest subunit%2C E | Chr... 237 5e-79
AT2G41340.1 | RNA polymerase II fifth largest subunit%2C D | Chr... 236 7e-79
AT2G41340.2 | RNA polymerase II fifth largest subunit%2C D | Chr... 184 8e-59
AT2G41340.3 | RNA polymerase II fifth largest subunit%2C D | Chr... 183 1e-58
>AT3G57080.1 | Eukaryotic rpb5 RNA polymerase subunit family protein
| Chr3:21125878-21127470 FORWARD LENGTH=222 | 201606
Length = 222
Score = 251 bits (641), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 158/209 (75%)
Query: 21 CMSSWVDTGSVESHRYYLARRTILEMLKDRGYEVPDPDLDLSLHEFRAIYGQTPDVDRLR 80
C+S +VD S ESHRYYLARR L+ML+DRGYEV D D++LSLH+FR +YG+ PDVDRLR
Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72
Query: 81 ISLPLLSNPSKKILVIFCGTEKVKLGVMRGILGKIANDSGLNRLILVLQSTITSQAQEAL 140
IS S+ +KK+ ++F GT VK+ +R ++ I + + LILVLQ+ +T+QA +A+
Sbjct: 73 ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132
Query: 141 GLFNVTIEIFQINELLVNITKHVLMPKHEILTQEEKRKLLSKYNLKDKQLPRMLLSDAFV 200
LF+ +EIFQI +LLVNITKH L P+H++L EEK LL K+++++KQLPR+ DA V
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192
Query: 201 RYYGLQKGQIVKVTYDGDLTGTHVTYRCI 229
RYYGL+KGQ+VKV Y G+LT +HV +RC+
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCV 221
>AT3G54490.1 | RNA polymerase II fifth largest subunit%2C E |
Chr3:20173673-20175297 FORWARD LENGTH=233 | 201606
Length = 233
Score = 237 bits (605), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 155/210 (73%)
Query: 20 SCMSSWVDTGSVESHRYYLARRTILEMLKDRGYEVPDPDLDLSLHEFRAIYGQTPDVDRL 79
+C+S DTG +ES R+YLAR T EML+DRGYEV + +L L+L EFR+++G+ P+++RL
Sbjct: 23 NCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERL 82
Query: 80 RISLPLLSNPSKKILVIFCGTEKVKLGVMRGILGKIANDSGLNRLILVLQSTITSQAQEA 139
RI +PL S+P KKILV+F GTE + + +R + +I+N+ GL+ +ILVLQS + AQ+A
Sbjct: 83 RICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKA 142
Query: 140 LGLFNVTIEIFQINELLVNITKHVLMPKHEILTQEEKRKLLSKYNLKDKQLPRMLLSDAF 199
L F T+E F I +LLVNITKH+ PK EIL +EEK +LL K+ L+DKQLP + D+F
Sbjct: 143 LTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSF 202
Query: 200 VRYYGLQKGQIVKVTYDGDLTGTHVTYRCI 229
VRYYGL+K Q+VK+TY + G VTYRCI
Sbjct: 203 VRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232
>AT2G41340.1 | RNA polymerase II fifth largest subunit%2C D |
Chr2:17229026-17230442 FORWARD LENGTH=218 | 201606
Length = 218
Score = 236 bits (602), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 110/204 (53%), Positives = 152/204 (74%)
Query: 26 VDTGSVESHRYYLARRTILEMLKDRGYEVPDPDLDLSLHEFRAIYGQTPDVDRLRISLPL 85
+ SVE H+YYLARRT +EML+DRGY+V D D++LSL +FRA+YG+ PDVD LRIS
Sbjct: 14 ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73
Query: 86 LSNPSKKILVIFCGTEKVKLGVMRGILGKIANDSGLNRLILVLQSTITSQAQEALGLFNV 145
+ SKKI V+FCGT VK+ MR I + + + LILVLQS IT+QA +A+ LF+
Sbjct: 74 RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133
Query: 146 TIEIFQINELLVNITKHVLMPKHEILTQEEKRKLLSKYNLKDKQLPRMLLSDAFVRYYGL 205
+E+F+I +LLVN++KHVL PKH++L +EK LL K+++++KQLPR+ D VRYYGL
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193
Query: 206 QKGQIVKVTYDGDLTGTHVTYRCI 229
+ GQ++KVTY +L+ +HVTYRC+
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217
>AT2G41340.2 | RNA polymerase II fifth largest subunit%2C D |
Chr2:17229026-17230293 FORWARD LENGTH=200 | 201606
Length = 200
Score = 184 bits (468), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 123/169 (72%)
Query: 26 VDTGSVESHRYYLARRTILEMLKDRGYEVPDPDLDLSLHEFRAIYGQTPDVDRLRISLPL 85
+ SVE H+YYLARRT +EML+DRGY+V D D++LSL +FRA+YG+ PDVD LRIS
Sbjct: 14 ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73
Query: 86 LSNPSKKILVIFCGTEKVKLGVMRGILGKIANDSGLNRLILVLQSTITSQAQEALGLFNV 145
+ SKKI V+FCGT VK+ MR I + + + LILVLQS IT+QA +A+ LF+
Sbjct: 74 RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133
Query: 146 TIEIFQINELLVNITKHVLMPKHEILTQEEKRKLLSKYNLKDKQLPRML 194
+E+F+I +LLVN++KHVL PKH++L +EK LL K+++++KQ+ +
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQVSKFF 182
>AT2G41340.3 | RNA polymerase II fifth largest subunit%2C D |
Chr2:17229026-17230316 FORWARD LENGTH=182 | 201606
Length = 182
Score = 183 bits (465), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 121/164 (73%)
Query: 26 VDTGSVESHRYYLARRTILEMLKDRGYEVPDPDLDLSLHEFRAIYGQTPDVDRLRISLPL 85
+ SVE H+YYLARRT +EML+DRGY+V D D++LSL +FRA+YG+ PDVD LRIS
Sbjct: 14 ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73
Query: 86 LSNPSKKILVIFCGTEKVKLGVMRGILGKIANDSGLNRLILVLQSTITSQAQEALGLFNV 145
+ SKKI V+FCGT VK+ MR I + + + LILVLQS IT+QA +A+ LF+
Sbjct: 74 RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133
Query: 146 TIEIFQINELLVNITKHVLMPKHEILTQEEKRKLLSKYNLKDKQ 189
+E+F+I +LLVN++KHVL PKH++L +EK LL K+++++KQ
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQ 177