BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3060.1
(410 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19520.1 | pentatricopeptide (PPR) repeat-containing protein ... 158 4e-42
AT1G01970.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 128 8e-33
AT5G61990.1 | Pentatricopeptide repeat (PPR) superfamily protein... 69 5e-12
AT1G12300.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 66 2e-11
AT5G39710.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 66 2e-11
>AT1G19520.1 | pentatricopeptide (PPR) repeat-containing protein |
Chr1:6760032-6762581 FORWARD LENGTH=725 | 201606
Length = 725
Score = 158 bits (399), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 146/273 (53%), Gaps = 46/273 (16%)
Query: 146 LIIISEIDWLTLLDKIKQGNLGLYFKMAEHVLDEDSFQTNSRDYLKLMHAYTKDNRFDDA 205
L+ + +DW+ L++++++GN Y K+AE VLDE SF + DY KL+H + K+N +D
Sbjct: 344 LLEPNRVDWIALINQLREGNTHAYLKVAEGVLDEKSFNASISDYSKLIHIHAKENHIEDV 403
Query: 206 ERILRKLTDKCWFIPPDIITFLILVQMYNKTNNVERAKASFDIIRRRDFLSAMKTNKSLI 265
ERIL+K++ F PDI+T LV MY+K+ N ERA +F+ ++ K +++I
Sbjct: 404 ERILKKMSQNGIF--PDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMI 461
Query: 266 MTFVNV----------------------------------------AQTLYTKMQLAHIQ 285
+ +VN A + + MQ A
Sbjct: 462 LGYVNAGKPKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDG 521
Query: 286 P-NLKSCAFLVDVYGQDGDSEQARRYIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALH 344
P + ++ + V+ YG+ G ++A+ D M +LG++PDD+C ++++ AY+ +N LDKAL
Sbjct: 522 PLSFEAYSLFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALR 581
Query: 345 LYLELEVEGVLTGFSTYKFLIEW---LGVLEHV 374
L L+LE +G+ G TY L++W LG++E
Sbjct: 582 LLLQLEKDGIEIGVITYTVLVDWMANLGLIEEA 614
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 22/132 (16%)
Query: 41 SSITNTTTTSD------NSSTFSKYVTFVKPFSSSSLLFKNIKSPNLFSSSFSIFSRSIH 94
S+IT+T + SD + T + V +P SS + F + L SS +I
Sbjct: 29 SAITSTISHSDRHLRSYDEQTPFQNVEIPRPISSFNRYFHFTRESRLSESSAAI------ 82
Query: 95 AQPINDSDSLLEWVEDGGPMTIFLPRFSFIMKGKLFDAYPDIDKETTLAMLLIIISEIDW 154
+DS+ E EDG FL RF +IM+GK+ +AYPD DK+ MLL+I+ ++
Sbjct: 83 ----DDSNDQEEDDEDG-TTNEFLSRFVWIMRGKVSEAYPDCDKKMIDGMLLLIVEKV-- 135
Query: 155 LTLLDKIKQGNL 166
+++I++G
Sbjct: 136 ---VEEIERGGF 144
>AT1G01970.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:338538-339905 FORWARD LENGTH=409 | 201606
Length = 409
Score = 128 bits (321), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 133/265 (50%), Gaps = 45/265 (16%)
Query: 153 DWLTLLDKIKQGNLGLYFKMAEHVLDEDSFQTNSRDYLKLMHAYTKDNRFDDAERILRKL 212
DWL++L ++K + Y K+AE L +DSF+ N+RDY K++H Y K N+ +DAER L +
Sbjct: 132 DWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHYYGKLNQVEDAERTLLSM 191
Query: 213 TDKCWFIPPDIITFLILVQMYNKTNNVERAKASFDIIRRRDFLSAMKTNKSLIMTFVNV- 271
++ + I D +T +VQ+Y+K + A+ +F+ I+ ++ S+IM ++
Sbjct: 192 KNRGFLI--DQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLDYRSYGSMIMAYIRAG 249
Query: 272 ---------------------------------------AQTLYTKMQLAHIQPNLKSCA 292
A+ ++ +Q+A I P++K C
Sbjct: 250 VPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFDAVQIAGITPDVKLCG 309
Query: 293 FLVDVYGQDGDSEQARRYIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALHLYLELEVE 352
L++ Y G S+ AR +NM + G + D+C + +LAAYE + L++AL +ELE +
Sbjct: 310 LLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEEKLNEALGFLVELEKD 369
Query: 353 GVLTGFSTYKFLIEW---LGVLEHV 374
++ G L +W LGV+E V
Sbjct: 370 SIMLGKEASAVLAQWFKKLGVVEEV 394
>AT5G61990.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr5:24900186-24903110 REVERSE LENGTH=974 | 201606
Length = 974
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 92/189 (48%), Gaps = 8/189 (4%)
Query: 185 NSRDYLKLMHAYTKDNRFDDAERILRKLTDKCWFIPPDIITFLILVQMYNKTNNVERAKA 244
+++ Y LM+ K+++ DDAE I R++ K I PD+ ++ +L+ ++K N+++A +
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGK--GIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 245 SFDIIRRRDFLSAMKTNKSLIMTF-----VNVAQTLYTKMQLAHIQPNLKSCAFLVDVYG 299
FD + + L+ F + A+ L +M + + PN + ++D Y
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 300 QDGDSEQARRYIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALHLYLELEVEGVLTGFS 359
+ GD +A R D M G PD ++++ N +++A+ ++ +G + +
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTA 767
Query: 360 TYKFLIEWL 368
+ LI W+
Sbjct: 768 PFNALINWV 776
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 103/221 (46%), Gaps = 10/221 (4%)
Query: 179 EDSFQTNSRDYLKLMHAYTKDNRFDDAERILRKLTDKCWFIPPDIITFLILVQMYNKTNN 238
E+ + N+ Y + Y + + F A++ ++++ + C +P ++ L+ Y K
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE-CGVLPNKVLC-TGLINEYCKKGK 572
Query: 239 VERAKASFDIIRRRDFLSAMKTNKSLIMTF-----VNVAQTLYTKMQLAHIQPNLKSCAF 293
V A +++ + + L KT L+ V+ A+ ++ +M+ I P++ S
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632
Query: 294 LVDVYGQDGDSEQARRYIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALHLYLELEVEG 353
L++ + + G+ ++A D M+ G P+ + +L + ++KA L E+ V+G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 354 VLTGFSTYKFLIEWLGVLEHVVHKEYFRKVDEKEML-LIPN 393
+ TY +I+ G + E FR DE ++ L+P+
Sbjct: 693 LHPNAVTYCTIID--GYCKSGDLAEAFRLFDEMKLKGLVPD 731
>AT1G12300.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:4184163-4186076 REVERSE LENGTH=637 |
201606
Length = 637
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 8/203 (3%)
Query: 189 YLKLMHAYTKDNRFDDAERILRKLTDKCWFIPPDIITFLILVQMYNKTNNVERAKASFDI 248
Y L+ + K+N D A +++ + K P+I TF IL+ Y K N ++ F
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSK--GCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Query: 249 IRRRDFLSAMKTNKSLIMTF-----VNVAQTLYTKMQLAHIQPNLKSCAFLVDVYGQDGD 303
+ R ++ T +LI F +NVA+ L+ +M + PN+ + L+D +G+
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488
Query: 304 SEQARRYIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALHLYLELEVEGVLTGFSTYKF 363
SE+A + + + D + ++ N + +D A L+ L ++GV G TY
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548
Query: 364 LIEWLGVLEHVVHKE-YFRKVDE 385
+I L + E FRK++E
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEE 571
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 109/255 (42%), Gaps = 43/255 (16%)
Query: 139 ETTLAMLL--------IIISEIDWLTLLDKI-KQGNLGLYFKMAEHVLDEDSFQTNSRDY 189
+T LAM L I + + + ++D + K G+L F + ++ TN Y
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE-MEMKGITTNIITY 301
Query: 190 LKLMHAYTKDNRFDDAERILRKLTDKCWFIPPDIITFLILVQMYNKTNNVERAKASFDII 249
L+ + R+DD ++LR + + I P+++TF +L+ + K + A
Sbjct: 302 NILIGGFCNAGRWDDGAKLLRDMIKR--KINPNVVTFSVLIDSFVKEGKLREA------- 352
Query: 250 RRRDFLSAMKTNKSLIMTFVNVAQTLYTKMQLAHIQPNLKSCAFLVDVYGQDGDSEQARR 309
+ L+ +M I P+ + L+D + ++ ++A +
Sbjct: 353 -----------------------EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 389
Query: 310 YIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALHLYLELEVEGVLTGFSTYKFLIEWLG 369
+D M+ G P+ R + ++ Y N +D L L+ ++ + GV+ TY LI+
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449
Query: 370 VLEHV-VHKEYFRKV 383
L + V KE F+++
Sbjct: 450 ELGKLNVAKELFQEM 464
>AT5G39710.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr5:15895729-15897972 FORWARD LENGTH=747 |
201606
Length = 747
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Query: 185 NSRDYLKLMHAYTKDNRFDDAERILRKLTDKCWFIPPDIITFLILVQMYNKTNNVERAKA 244
N R Y L+ +++ ++A R+LR++ D + P ++T+ L+ + T +E A A
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF--SPSVVTYNALINGHCVTGKMEDAIA 436
Query: 245 SFDIIRRRDFLSAMKTNKSLIMTFV---NVAQTLYTKMQLAH--IQPNLKSCAFLVDVYG 299
+ ++ + + + +++ F +V + L K ++ I+P+ + + L+ +
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 300 QDGDSEQARRYIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALHLYLELEVEGVLTGFS 359
+ +++A + M+R+G PD+ ++++ AY + L+KAL L+ E+ +GVL
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 360 TYKFLIEWL 368
TY LI L
Sbjct: 557 TYSVLINGL 565
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 21/229 (9%)
Query: 150 SEIDWLTLLDKIKQGNLGLYFKMAEHVLDE---DSFQTNSRDYLKLMHAYTKDNRFDDAE 206
+E + TL+D Q Y A VL E + F + Y L++ + + +DA
Sbjct: 379 NERTYTTLVDGFSQKG---YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 207 RILRKLTDKCWFIPPDIITFLILVQMYNKTNNVERAKASFDIIRRRDFLSAMK----TNK 262
+L + +K + PD++++ ++ + ++ +V+ A ++R +K T
Sbjct: 436 AVLEDMKEK--GLSPDVVSYSTVLSGFCRSYDVDEALR----VKREMVEKGIKPDTITYS 489
Query: 263 SLIMTFVNVAQT-----LYTKMQLAHIQPNLKSCAFLVDVYGQDGDSEQARRYIDNMIRL 317
SLI F +T LY +M + P+ + L++ Y +GD E+A + + M+
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Query: 318 GYRPDDRCTSSMLAAYENKNLLDKALHLYLELEVEGVLTGFSTYKFLIE 366
G PD S ++ ++ +A L L+L E + TY LIE
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 88/200 (44%), Gaps = 8/200 (4%)
Query: 175 HVLDEDSFQTNSRDYLKLMHAYTKDNR-FDDAERILRKLTDKCWFIPPDIITFLILVQMY 233
H+ F Y ++ A + R AE + +++ + + P++ T+ IL++ +
Sbjct: 158 HLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES--QVSPNVFTYNILIRGF 215
Query: 234 NKTNNVERAKASFDIIRRRDFLSAMKTNKSLIMTFVNVAQT-----LYTKMQLAHIQPNL 288
N++ A FD + + L + T +LI + + + L M L ++PNL
Sbjct: 216 CFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNL 275
Query: 289 KSCAFLVDVYGQDGDSEQARRYIDNMIRLGYRPDDRCTSSMLAAYENKNLLDKALHLYLE 348
S +++ ++G ++ + M R GY D+ ++++ Y + +AL ++ E
Sbjct: 276 ISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335
Query: 349 LEVEGVLTGFSTYKFLIEWL 368
+ G+ TY LI +
Sbjct: 336 MLRHGLTPSVITYTSLIHSM 355