BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3100.1
(147 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 44 1e-05
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 43.9 bits (102), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 1 MTDHLNVFQGLLNKLSDMGINFDEGIYGLWLLGTLPDSWEVFRMSLCNSTSEGV-ISMDL 59
+ + + VF + + + G+ DE + ++ P SW F L V + M+
Sbjct: 320 ILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLPVWMLMER 379
Query: 60 VK--NSILNEEARRQS-NPSSSSSDVLVTESRGRSSHRESKKNGSRSKS---NKFANVEC 113
VK +L A+ + P++ SS + T S G ++HR S+ G + K ++ + C
Sbjct: 380 VKAEEELLRNGAKGVTYRPATGSSQMERTPSLG-TTHRGSQSVGWKRKEPERDERVIIVC 438
Query: 114 HYCHKRGHLKKNCW 127
C ++GHL K+CW
Sbjct: 439 DNCGRKGHLAKHCW 452