BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3250.1
(220 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 89 2e-20
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 89 3e-20
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 89 3e-20
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 67 8e-13
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 67 1e-12
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 89.4 bits (220), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 7/193 (3%)
Query: 29 ITHLLFADDCIIFGRNSIENTHNLKHILEIFSATSGQMINYSKSNIFHSKNSHPKFKRII 88
ITHL FADD ++F + + I F+ SG I+ KS I+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 89 MRSLKVKYASTSEKYLGSQLFIGTNKTKVFNELVDQINQKLCKWNHSFLSQAGRTIVIEA 148
+ S + +YLG L T + LV++I ++ KW LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 IAAAVPRYQMQCFAIPKGVSKRIRTIQKSFWWGKSKGIYTK----AWSDICRPKRLGGLG 204
+ ++ + M F +P K I +I SF W + + TK AWSD+C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDEGGLG 185
Query: 205 LHK-PELDNIALL 216
+ E + ++LL
Sbjct: 186 IRSLKEANKVSLL 198
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 89.0 bits (219), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 7/193 (3%)
Query: 29 ITHLLFADDCIIFGRNSIENTHNLKHILEIFSATSGQMINYSKSNIFHSKNSHPKFKRII 88
ITHL FADD ++F + + I F+ SG I+ KS I+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 89 MRSLKVKYASTSEKYLGSQLFIGTNKTKVFNELVDQINQKLCKWNHSFLSQAGRTIVIEA 148
+ S + +YLG L T + LV++I ++ KW LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 IAAAVPRYQMQCFAIPKGVSKRIRTIQKSFWWGKSKGIYTK----AWSDICRPKRLGGLG 204
+ ++ + M F +P K I +I SF W + + TK AWSD+C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDEGGLG 185
Query: 205 LHK-PELDNIALL 216
+ E + ++LL
Sbjct: 186 IRSLKEANKVSLL 198
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 89.0 bits (219), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 7/193 (3%)
Query: 29 ITHLLFADDCIIFGRNSIENTHNLKHILEIFSATSGQMINYSKSNIFHSKNSHPKFKRII 88
ITHL FADD ++F + + I F+ SG I+ KS I+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 89 MRSLKVKYASTSEKYLGSQLFIGTNKTKVFNELVDQINQKLCKWNHSFLSQAGRTIVIEA 148
+ S + +YLG L T + LV++I ++ KW LS AGR +I +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 149 IAAAVPRYQMQCFAIPKGVSKRIRTIQKSFWWGKSKGIYTK----AWSDICRPKRLGGLG 204
+ ++ + M F +P K I +I SF W + + TK AWSD+C PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDEGGLG 185
Query: 205 LHK-PELDNIALL 216
+ E + ++LL
Sbjct: 186 IRSLKEANKVSLL 198
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 67.4 bits (163), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 85 KRIIMRSLKVKYASTSEKYLGSQLFIGTNKTKVFNELVDQINQKLCKWNHSFLSQAGRTI 144
K I+ S + +YLG L T + LV++I ++ KW LS AGR
Sbjct: 9 KADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 68
Query: 145 VIEAIAAAVPRYQMQCFAIPKGVSKRIRTIQKSFWWGKSKGIYTK----AWSDICRPKRL 200
+I ++ ++ + M F +P K I +I SF W + + TK AWSD+C PK
Sbjct: 69 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDE 127
Query: 201 GGLGLHK-PELDNIALL 216
GGLG+ E + ++LL
Sbjct: 128 GGLGIRSLKEANKVSLL 144
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 85 KRIIMRSLKVKYASTSEKYLGSQLFIGTNKTKVFNELVDQINQKLCKWNHSFLSQAGRTI 144
K I+ S + +YLG L T + LV++I ++ KW LS AGR
Sbjct: 9 KADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 68
Query: 145 VIEAIAAAVPRYQMQCFAIPKGVSKRIRTIQKSFWWGKSKGIYTK----AWSDICRPKRL 200
+I ++ ++ + M F +P K I +I SF W + + TK AWSD+C PK
Sbjct: 69 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPE-LNTKKAKVAWSDVCTPKDE 127
Query: 201 GGLGL 205
GGLG+
Sbjct: 128 GGLGI 132