BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3260.1
(248 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 86 2e-19
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 59 1e-09
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 86.3 bits (212), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 145 LADRFKSTLNNIISQFQAAFVPGRNITDNIIIGQEIIHSYKKLKGAKGYFGLKIDTSKAF 204
+ +R K + N+I QA+F+PGR TDNI+ QE +HS ++ KG KG+ LK+D KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 205 DRIEWNFIIDIMRQLGYSEHWLKMI 229
DRI W+++ D + G+ E WL I
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEI 85
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 48 LTSIPAREEVDKAIHWLKKDAASGSDGFPTFFFQSNWDTVSNDIYTLVQSFFNNATLPYE 107
L+++P+ +E+ A+ + ++ A G D F FF +W V + V+ FF L
Sbjct: 527 LSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKR 586
Query: 108 TNHTHICLIPKISSPQTTVHYRSISLLNTTYKIIT 142
N T I LIPK++ +R +S YKIIT
Sbjct: 587 FNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621