BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3270.1
(200 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 58 5e-10
AT1G52990.1 | thioredoxin family protein | Chr1:19740503-1974344... 45 2e-05
AT1G52990.2 | thioredoxin family protein | Chr1:19741201-1974344... 44 2e-05
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 57.8 bits (138), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 41 KWIPPTPPCIKINIDDSYKSVDSIIGISIIAHDSKSTFVEAYATTFRGR-SSEESEALAI 99
KW PP +K N D S+ +++ G+ I +S+ T +E F+GR ++EE+E +
Sbjct: 104 KWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTL 163
Query: 100 LQGLIWAENNNHNSVIIESDNSNL--IAHLKDSNHQVQWQSNIHIRRIKDIQRKLDSVSY 157
+ + + H VI E DN + + + K SN ++Q + I+ +S+ +
Sbjct: 164 IWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQ----HFLDTIQSWIPSFESIEF 219
Query: 158 S--NRKLNVQADKLAKWARKKNRS-KTWKTVPYMLVSLYCN 195
S +R+ N AD LAK A K+N + + PY L S Y N
Sbjct: 220 SFKHREQNGCADFLAKQAIKENTQWSLFHSCPYFL-SPYVN 259
>AT1G52990.1 | thioredoxin family protein | Chr1:19740503-19743449
REVERSE LENGTH=313 | 201606
Length = 313
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 47 PPC-IKINIDDSYKSVDSIIGISIIAHDSKSTFVEAYATTFRGR-SSEESEALAILQGLI 104
P C +K N D S+ D + G+ + +S+ T +E F+GR + EE+E A++ +
Sbjct: 44 PSCRVKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQ 103
Query: 105 WAENNNHNSVIIESDNSNL--IAHLKDSNHQVQWQSNIHIRRIKDIQRKLDSVS--YSNR 160
+ VI E DNSN+ + + K N +++ ++ IK S +++R
Sbjct: 104 ATSAFGYTKVIFEGDNSNVNRLINTKSDNPRLKH----YLDTIKSWIPSFTSTEFIFTHR 159
Query: 161 KLNVQADKLAKWARK 175
+ N AD L K A K
Sbjct: 160 EQNQCADTLVKKAIK 174
>AT1G52990.2 | thioredoxin family protein | Chr1:19741201-19743449
REVERSE LENGTH=243 | 201606
Length = 243
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 47 PPC-IKINIDDSYKSVDSIIGISIIAHDSKSTFVEAYATTFRGR-SSEESEALAILQGLI 104
P C +K N D S+ D + G+ + +S+ T +E F+GR + EE+E A++ +
Sbjct: 44 PSCRVKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQ 103
Query: 105 WAENNNHNSVIIESDNSNL--IAHLKDSNHQVQWQSNIHIRRIKDIQRKLDSVS--YSNR 160
+ VI E DNSN+ + + K N +++ ++ IK S +++R
Sbjct: 104 ATSAFGYTKVIFEGDNSNVNRLINTKSDNPRLKH----YLDTIKSWIPSFTSTEFIFTHR 159
Query: 161 KLNVQADKLAKWARKKNRS-KTWKTVPYML 189
+ N AD L K A K + + P+ L
Sbjct: 160 EQNQCADTLVKKAIKSSTQWSLFNCCPHFL 189