BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3320.1
(339 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801... 102 6e-27
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 64 5e-11
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C... 47 1e-05
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 46 3e-05
>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
Length = 97
Score = 102 bits (254), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Query: 2 SNMIQPQIPRLTKENYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVQKCVLK 61
SN + Q+P LTK NY++W ++M +LG+ D+W+IV+ G++EP E E ++ QK L+
Sbjct: 3 SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLR 60
Query: 62 DSRKMDKKALFLIYQGIDSPTFEKVSEAKSSKEA 95
DSRK DKKAL LIYQG+D TFEKV EA S+K+
Sbjct: 61 DSRKRDKKALCLIYQGLDEDTFEKVVEATSAKDG 94
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 16 NYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVQKCVLKDSRKM---DKKALF 72
+YE W L Q LWD+V NG + + +Q L R D KAL
Sbjct: 16 DYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQ 75
Query: 73 LIYQGIDSPTFEKVSEAKSSKEAWNILK--NSFRGVDKLVKVRLQILRGEFERLSMNEGE 130
++ + F K A S+K+ W++L+ N + +L +V ++ L + E L M + E
Sbjct: 76 ILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKE 135
Query: 131 LVSDYVSRVLSNVNEMKRCGEKCDDVRVMEKILRSLTPKFDNVVIVVEESKDLESMTVDE 190
S Y+ + L + + R + D + + + +L+ FD + ++EE D+ MT
Sbjct: 136 SGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKS 195
Query: 191 LMGTL--QIHE 199
L+ ++HE
Sbjct: 196 LVEYFYYRVHE 206
>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
Length = 405
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 16 NYEHWCIQMSVLLGSQDLWDIVQNGYVEPTQEEESFMNDVQK---CVLKDSRKMDKKALF 72
NYE W M L + LWDIV+ G + ++ + +DS D KAL
Sbjct: 18 NYEIWAPIMKTSLAEKGLWDIVKYGIPPDLSKIPELATKIRTQDLSIYRDSAVKDTKALH 77
Query: 73 LIYQGIDSPTFEKVSEAKSSKEAWNILKNSF----RGVDKLVKVRL---QILRGEFER 123
L+ + F K E S+K W+++K + G++KL + + +L F++
Sbjct: 78 LLQSFLPDSVFRKTLETTSAKHLWDLVKEDYVQAKLGMEKLPEYHMFAINVLPATFDK 135
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 38/222 (17%)
Query: 89 AKSSKEAWNILKNSFRGVDKLVKVRLQILRGEFERLSMNEGEL-VSDYVSRVLSNVNEMK 147
+ +S++ W +KN FR +RL + E + + G++ V+DY ++ + ++
Sbjct: 92 SSTSRDIWLRIKNQFRNNKDARALRL-----DSELRTKDIGDMRVADYYRKMKKLADSLR 146
Query: 148 RCGEKCDDVRVMEKILRSLTPKFDNVVIVVEESKDLESMTVDELMGTLQIHEQRVNRNVA 207
D ++ +L L PKFDN++ V++ + S D+ LQ E R+ R +
Sbjct: 147 NVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSF--DDAATMLQEEEDRLKRAIK 204
Query: 208 TSSNCSVDQVLQAKLTLEEKQYTPQKERGYESYGRGYDNGRRGFGNQRGRNFFNRGKTNE 267
+ VD + L + P N +R GNQ G
Sbjct: 205 PNP-THVDHS-SSSTVLACSEAPPVT------------NFQRSGGNQMGY---------- 240
Query: 268 PRGRGRGNFTRAYNSQGRDKRDIECYNCHKLGHYSNECWYKN 309
RGRGRGN +GR R YN ++ +Y+N
Sbjct: 241 -RGRGRGNNI----FRGRGGR-FSYYNMPTFNSWNRPPFYQN 276