BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3380.1
(167 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 125 1e-33
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 125 1e-33
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 91 1e-22
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 49 9e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 125 bits (314), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 74/113 (65%)
Query: 6 KLNGYSDSDWAGCPDTRRSTTGFCVVLGNSLISWGSKKQLTVARSSTEAEYRALSTVAFE 65
+L +SD+ + C DTRRST G+C+ LG SLISW SKKQ V++SS EAEYRALS E
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500
Query: 66 LLWISYLLIELHHPPSDPIHLYCDNLGAKSLVMNPIFHARIKHIEVDYHFIRD 118
++W++ EL P S P L+CDN A + N +FH R KHIE D H +R+
Sbjct: 501 MMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 125 bits (314), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 74/113 (65%)
Query: 6 KLNGYSDSDWAGCPDTRRSTTGFCVVLGNSLISWGSKKQLTVARSSTEAEYRALSTVAFE 65
+L +SD+ + C DTRRST G+C+ LG SLISW SKKQ V++SS EAEYRALS E
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500
Query: 66 LLWISYLLIELHHPPSDPIHLYCDNLGAKSLVMNPIFHARIKHIEVDYHFIRD 118
++W++ EL P S P L+CDN A + N +FH R KHIE D H +R+
Sbjct: 501 MMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 90.5 bits (223), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 6 KLN--GYSDSDWAGCPDTRRSTTGFCVVLGNSLISWGSKKQLTVARSSTEAEYRALSTVA 63
KLN + DSDWAGC TRRSTTGFC LG ++ISW +K+Q TV+RSSTE EYRAL+ A
Sbjct: 161 KLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTA 220
Query: 64 FELLWIS 70
EL W S
Sbjct: 221 AELTWSS 227
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 48.5 bits (114), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 3 DLQKLNGYSDSDWAGCPDTRRSTTGFC 29
DLQ L ++DSDWA CPDTRRS TGFC
Sbjct: 54 DLQ-LKAFADSDWASCPDTRRSVTGFC 79