BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3420.1
(167 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50300.1 | TBP-associated factor 15 | Chr1:18628818-18631662 ... 197 1e-62
AT5G58470.2 | TBP-associated factor 15B | Chr5:23638566-23640854... 58 4e-10
AT5G58470.1 | TBP-associated factor 15B | Chr5:23638566-23640854... 58 4e-10
AT5G16260.1 | RNA binding (RRM/RBD/RNP motifs) family protein | ... 50 2e-07
>AT1G50300.1 | TBP-associated factor 15 | Chr1:18628818-18631662
REVERSE LENGTH=372 | 201606
Length = 372
Score = 197 bits (501), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 120/154 (77%), Gaps = 14/154 (9%)
Query: 10 PSNGSVYVCNLPQGTDEDMLAEFFGTIGLLKKDKRTGRPKIWFYRDKVTNEPKGDATVTY 69
P+NGSVYV NLP GTDE+MLA++FGTIGLLK+DKRTG PK+W YRDK T+EPKGDATVTY
Sbjct: 5 PTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTY 64
Query: 70 EDPHAALAAVEWFNNKDFHGSTIGVFIAESKNKDDVSYNSGHQIQHIEDTVVGDDFGGQV 129
EDPHAALAAVEWFNNKDFHG+TIGVF+AESKNK N+G ++ +E F G
Sbjct: 65 EDPHAALAAVEWFNNKDFHGNTIGVFMAESKNK-----NAGDAVEFVE-------FDGGA 112
Query: 130 DDAGNMNGGGRGGGRGDASGKAWQQDGDWMCPNT 163
++ GRG G+ D+S K WQQDGDWMCPNT
Sbjct: 113 EETNGGA--GRGRGQADSSAKPWQQDGDWMCPNT 144
>AT5G58470.2 | TBP-associated factor 15B | Chr5:23638566-23640854
REVERSE LENGTH=422 | 201606
Length = 422
Score = 57.8 bits (138), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 15 VYVCNLPQGTDEDMLAEFFGTIGLLKKDK-RTGRPKIWFYRDKV-TNEP---KGDATVTY 69
+Y+ NLP D L + FG IG + + K + G W Y K+ T+E KGDA + Y
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 70 EDPHAALAAVEWFNNKDFHGSTIGVFIAE 98
EDP AA +A +FNN + G+ I V +AE
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKISVTMAE 370
>AT5G58470.1 | TBP-associated factor 15B | Chr5:23638566-23640854
REVERSE LENGTH=422 | 201606
Length = 422
Score = 57.8 bits (138), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 15 VYVCNLPQGTDEDMLAEFFGTIGLLKKDK-RTGRPKIWFYRDKV-TNEP---KGDATVTY 69
+Y+ NLP D L + FG IG + + K + G W Y K+ T+E KGDA + Y
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 70 EDPHAALAAVEWFNNKDFHGSTIGVFIAE 98
EDP AA +A +FNN + G+ I V +AE
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKISVTMAE 370
>AT5G16260.1 | RNA binding (RRM/RBD/RNP motifs) family protein |
Chr5:5311363-5315496 FORWARD LENGTH=519 | 201606
Length = 519
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 12 NGSVYVCNLPQGTDEDMLAEFFGTIGLLKKDKRTGRPKIWFYRDKVTNEPKGDATVTY-E 70
N +YV LP + +AE F G++K+D TG+P+I Y DK T + KGDA ++Y +
Sbjct: 275 NPHIYVNGLPDDVTIEEVAEVFSKCGIIKEDD-TGKPRIKLYSDKATGKLKGDALISYMK 333
Query: 71 DPHAALA 77
+P LA
Sbjct: 334 EPSVDLA 340