BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3430.1
(247 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50300.2 | TBP-associated factor 15 | Chr1:18628818-18631282 ... 207 2e-66
AT1G50300.1 | TBP-associated factor 15 | Chr1:18628818-18631662 ... 208 1e-65
AT1G67325.2 | Ran BP2/NZF zinc finger-like superfamily protein |... 49 1e-06
AT1G67325.1 | Ran BP2/NZF zinc finger-like superfamily protein |... 45 3e-05
>AT1G50300.2 | TBP-associated factor 15 | Chr1:18628818-18631282
REVERSE LENGTH=282 | 201606
Length = 282
Score = 207 bits (528), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 134/165 (81%), Gaps = 3/165 (1%)
Query: 5 TSCGNVNFAFRGVCNRCGSARPAGASGTGAGAVGRGRGRGDDSGGRG--RSIGAPAGLFG 62
TSC NVNFAFRGVCNRCG+ARPAGASG GA G GG + GAP GLFG
Sbjct: 54 TSCTNVNFAFRGVCNRCGTARPAGASGGSMGAGRGRGRGGGADGGAPGKQPSGAPTGLFG 113
Query: 63 PNDWSCPMCANINWAKRLKCNICNTNKPGTNEGGVRGGRAGGYKELDEEEIEETRRRRRE 122
PNDW+CPMC N+NWAKRLKCNICNTNKPG NEGGVRGGR GGYKELDE+E+EET+RRRRE
Sbjct: 114 PNDWACPMCGNVNWAKRLKCNICNTNKPGQNEGGVRGGRGGGYKELDEQELEETKRRRRE 173
Query: 123 AEEDDGELYDEFGNLKKKFRAKTHQAEAGQVLRGAGRAGWEVEEL 167
AEEDDGE+YDEFGNLKKK+R KT+QA+ + AGRAGWEVEEL
Sbjct: 174 AEEDDGEMYDEFGNLKKKYRVKTNQADTRPAV-AAGRAGWEVEEL 217
>AT1G50300.1 | TBP-associated factor 15 | Chr1:18628818-18631662
REVERSE LENGTH=372 | 201606
Length = 372
Score = 208 bits (530), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 134/165 (81%), Gaps = 3/165 (1%)
Query: 5 TSCGNVNFAFRGVCNRCGSARPAGASGTGAGAVGRGRGRGDDSGGRG--RSIGAPAGLFG 62
TSC NVNFAFRGVCNRCG+ARPAGASG GA G GG + GAP GLFG
Sbjct: 144 TSCTNVNFAFRGVCNRCGTARPAGASGGSMGAGRGRGRGGGADGGAPGKQPSGAPTGLFG 203
Query: 63 PNDWSCPMCANINWAKRLKCNICNTNKPGTNEGGVRGGRAGGYKELDEEEIEETRRRRRE 122
PNDW+CPMC N+NWAKRLKCNICNTNKPG NEGGVRGGR GGYKELDE+E+EET+RRRRE
Sbjct: 204 PNDWACPMCGNVNWAKRLKCNICNTNKPGQNEGGVRGGRGGGYKELDEQELEETKRRRRE 263
Query: 123 AEEDDGELYDEFGNLKKKFRAKTHQAEAGQVLRGAGRAGWEVEEL 167
AEEDDGE+YDEFGNLKKK+R KT+QA+ + AGRAGWEVEEL
Sbjct: 264 AEEDDGEMYDEFGNLKKKYRVKTNQADTRPAV-AAGRAGWEVEEL 307
>AT1G67325.2 | Ran BP2/NZF zinc finger-like superfamily protein |
Chr1:25209825-25212412 REVERSE LENGTH=288 | 201606
Length = 288
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 20/90 (22%)
Query: 64 NDWSCPMCANINWAKRLKCNI--CNTNKPGTNEGGVRGGRAGGYKELDEEEIEETRRRRR 121
NDW+CP C N+N++ R CN+ CNT KPG+ +GG + ++
Sbjct: 196 NDWTCPNCGNVNFSFRTVCNMRKCNTPKPGSQQGG-----------------SSDKISKQ 238
Query: 122 EAEEDDGELYDEFGNLKKKFRAKTHQAEAG 151
A E + D GN+ FR+K ++ G
Sbjct: 239 NAPEGSWKC-DNCGNINYPFRSKCNRQNCG 267
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 23/91 (25%)
Query: 5 TSCGNVNFAFRGVCN--RCGSARPAGASGTGAGAVGRGRGRGDDSGGRGRSIGAPAGLFG 62
+CGNVNF+FR VCN +C + +P G + + + AP G
Sbjct: 201 PNCGNVNFSFRTVCNMRKCNTPKPGSQQGGSSDKISKQN--------------APEG--- 243
Query: 63 PNDWSCPMCANINWAKRLKCN--ICNTNKPG 91
W C C NIN+ R KCN C +KPG
Sbjct: 244 --SWKCDNCGNINYPFRSKCNRQNCGADKPG 272
>AT1G67325.1 | Ran BP2/NZF zinc finger-like superfamily protein |
Chr1:25209825-25212412 REVERSE LENGTH=287 | 201606
Length = 287
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 24/91 (26%)
Query: 5 TSCGNVNFAFRGVCN--RCGSARPAGASGTGAGAVGRGRGRGDDSGGRGRSIGAPAGLFG 62
+CGNVNF+FR VCN +C + +P G+ G + + + AP G
Sbjct: 201 PNCGNVNFSFRTVCNMRKCNTPKP-GSQGGSSDKISKQN--------------APEG--- 242
Query: 63 PNDWSCPMCANINWAKRLKCN--ICNTNKPG 91
W C C NIN+ R KCN C +KPG
Sbjct: 243 --SWKCDNCGNINYPFRSKCNRQNCGADKPG 271
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 64 NDWSCPMCANINWAKRLKCNI--CNTNKPGTNEGGVRGGRAGGYKELDEEEIEETRRRRR 121
NDW+CP C N+N++ R CN+ CNT KPG+ G + ++
Sbjct: 196 NDWTCPNCGNVNFSFRTVCNMRKCNTPKPGSQGG------------------SSDKISKQ 237
Query: 122 EAEEDDGELYDEFGNLKKKFRAKTHQAEAG 151
A E + D GN+ FR+K ++ G
Sbjct: 238 NAPEGSWKC-DNCGNINYPFRSKCNRQNCG 266