BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000058.1_g3470.1
         (149 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11760.1 | mediator of RNA polymerase II transcription subuni...   202   8e-68

>AT1G11760.1 | mediator of RNA polymerase II transcription
           subunit-like protein | Chr1:3972356-3972811 REVERSE
           LENGTH=151 | 201606
          Length = 151

 Score =  202 bits (514), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 124/154 (80%), Gaps = 8/154 (5%)

Query: 1   MDSTVDALNNAYQEYIAAAAAVIEAKEISGGQKTSTTESALENFKQKWELFRVACDQAEE 60
           MD+ VD+LN AY++++ A+A V+E+KE +GGQK   T++ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSSATTNGKLGQ-----TMTSTGLPPISAVRLEQMSKAVRW 115
           FVESVKQRIGSECLVDEATG + T  G  GQ     T  +T LPPISAVRLEQMS+AVRW
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAG--GQAPAAVTGAATSLPPISAVRLEQMSRAVRW 118

Query: 116 LVIELQQGSGVNSAASHNQSSVPFDARFSEDAGQ 149
           LV+ELQ+GSGV   + H+ SS  FD+RFSED+ Q
Sbjct: 119 LVLELQRGSGVAPGSVHS-SSTGFDSRFSEDSTQ 151

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