BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000058.1_g3540.1
         (144 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29785.1 | Pol-like polyprotein/retrotransposon | Chr3:116123...    45   1e-06

>AT3G29785.1 | Pol-like polyprotein/retrotransposon |
           Chr3:11612357-11612686 REVERSE LENGTH=109 | 201606
          Length = 109

 Score = 45.1 bits (105), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 10  LNGANYHLWKGKMEDLLFVKEFHAAVFHEKKPDEKTEDQRATEDQWALLHRQVCCLMRQW 69
           ++G +Y   + K+ED L+ K+ H  +       +K E    ++D W +L+RQV  ++R  
Sbjct: 9   VDGTSYSFCRMKIEDYLYGKKLHQPL------GKKVE--TMSQDDWNILYRQVLDVIRLT 60

Query: 70  IDDNVLHDIENETNARLLWLKLEQLFAWKTANNKMYTVKKLLGIAE 115
           I  N+ H++  E +   L   L  ++   + NN + + ++ + I +
Sbjct: 61  ISKNIAHNVAKEKSPDGLMKVLSDIYKKPSTNNTVISHEETISIED 106

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