BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3550.1
(106 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43790.1 | Pentatricopeptide repeat (PPR) superfamily protein... 66 8e-14
AT3G08820.1 | Pentatricopeptide repeat (PPR) superfamily protein... 65 2e-13
AT5G66520.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 63 1e-12
AT1G05750.2 | Tetratricopeptide repeat (TPR)-like superfamily pr... 62 2e-12
AT1G05750.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 62 2e-12
>AT5G43790.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr5:17592099-17593481 REVERSE LENGTH=460 | 201606
Length = 460
Score = 66.2 bits (160), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 6/70 (8%)
Query: 37 VTLSGSANSEFGPALSLVEEGLRFFKSMNEVYGIELRIEHYGCTVDLLGQARMLDEAKKL 96
VT+S ++S LV+EGL+ F SM VYGIE ++EHYGC VDLLG++ L+EA++
Sbjct: 322 VTISACSHS------GLVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEEC 375
Query: 97 VSEMHMQSNS 106
+ +M ++ N+
Sbjct: 376 IKKMPVKPNA 385
>AT3G08820.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr3:2677122-2679179 REVERSE LENGTH=685 | 201606
Length = 685
Score = 65.5 bits (158), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 42/54 (77%)
Query: 53 LVEEGLRFFKSMNEVYGIELRIEHYGCTVDLLGQARMLDEAKKLVSEMHMQSNS 106
L+++GLRFF +++ VY ++ +EHYGC VDL G+A MLD+A +L+ +M M+ N+
Sbjct: 429 LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA 482
>AT5G66520.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr5:26551879-26553741 FORWARD LENGTH=620 |
201606
Length = 620
Score = 63.2 bits (152), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 53 LVEEGLRFFKSMNEVYGIELRIEHYGCTVDLLGQARMLDEAKKLVSEMHMQSNS 106
LVEEG F SM Y ++ IEHYGC VDLLG+A +LDEAK+ + EM ++ N+
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNA 416
>AT1G05750.2 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:1721523-1723025 FORWARD LENGTH=500 |
201606
Length = 500
Score = 62.4 bits (150), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 35 DDVTLSG--SANSEFGPALSLVEEGLRFFKSMNEVYGIELRIEHYGCTVDLLGQARMLDE 92
D VT +G +A S G LVEEGLR+F+ M Y I RIEHYGC VDL +A L++
Sbjct: 306 DAVTFTGALTACSHVG----LVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLED 361
Query: 93 AKKLVSEMHMQSN 105
A KLV M M+ N
Sbjct: 362 ALKLVQSMPMKPN 374
>AT1G05750.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:1721523-1723025 FORWARD LENGTH=500 |
201606
Length = 500
Score = 62.4 bits (150), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 35 DDVTLSG--SANSEFGPALSLVEEGLRFFKSMNEVYGIELRIEHYGCTVDLLGQARMLDE 92
D VT +G +A S G LVEEGLR+F+ M Y I RIEHYGC VDL +A L++
Sbjct: 306 DAVTFTGALTACSHVG----LVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLED 361
Query: 93 AKKLVSEMHMQSN 105
A KLV M M+ N
Sbjct: 362 ALKLVQSMPMKPN 374