BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3600.1
(693 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 94 2e-20
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 80 7e-16
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 67 6e-12
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 56 4e-09
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 33/265 (12%)
Query: 18 IPIKLQGDNYITWKSLLLPIFKKYKVFDIIEGTRPCPSKFLVNDDESSDTISQSYIDWQE 77
+ + L NY W+ L + + V I+G SS + W+E
Sbjct: 24 VTLDLNKLNYDVWRELFETLCLSFGVLGHIDG--------------SSTPTPMTEKRWKE 69
Query: 78 EDQSLLIWLNSTLSESVIPYVIGVN-SARDLWLTLEENFSSSSTAHVLQLQNKLREISKG 136
D + +W+ T+++S++ +I V +ARDLWL+LE F + A LQ +N+LR +
Sbjct: 70 RDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTID 129
Query: 137 NLSISEYLGSIKKITDNLAAAGSPASKNEIIITMLRGLPSDYDAFAAAIRVRIPPVSIHE 196
+LS+ EY +K ++D L SP S +++ +L GL YD I+ + P S E
Sbjct: 130 DLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTE 189
Query: 197 LHNLLVTEEVTLTDKIKQSSDQINQAFLTSSSSSNMNATYGHHPQRGKQ-FHDNKKSQGR 255
++L+ EE L++K K S N L SN+ T +R Q +H+N + GR
Sbjct: 190 ARSMLLMEESRLSNKSKSSLSHTNHPSL-----SNVLFTVPRQQERYPQEYHNNNSNMGR 244
Query: 256 RGGRYNQNYYNSAKSTQPNQHGGNS 280
+S + N+ GG+S
Sbjct: 245 ------------GRSKKKNRGGGSS 257
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 35/271 (12%)
Query: 10 SVSSMANAIPIKL--QGDNYITWKSLLLPIFKKYKVFDIIEGTRPCPSKFLVNDDESSDT 67
VS++ + IP+ L + NY W+ L L + V I+GT P+ ND
Sbjct: 12 GVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-LPTN--AND------ 62
Query: 68 ISQSYIDWQEEDQSLLIWLNSTLS-ESVIPYVIGVNSARDLWLTLEENFSSSSTAHVLQL 126
++WQ+ D + + L TL+ + + +++RD+WL ++ F ++ A L+L
Sbjct: 63 -----VNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRL 117
Query: 127 QNKLREISKGNLSISEYLGSIKKITDNLAAAGSPASKNEIIITMLRGLPSDYDAFAAAIR 186
++LR G++ +++Y +KK+ D+L P + +++ +L GL +D I+
Sbjct: 118 DSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIK 177
Query: 187 VRIPPVSIHELHNLLVTEEVTLTDKIKQSSDQINQAFLTSSSSSNMNATYGHHP----QR 242
R P S + +L EE L IK + ++ SSSS + A P QR
Sbjct: 178 HRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDH-----SSSSTVLACSEAPPVTNFQR 232
Query: 243 GKQFHDNKKSQGR-------RGGRYNQNYYN 266
+ +GR RGGR+ +YYN
Sbjct: 233 SGGNQMGYRGRGRGNNIFRGRGGRF--SYYN 261
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 31/204 (15%)
Query: 25 DNYITWKSLLLPIFKKYKVFDIIEGTRPCPSKFLVNDDESSDTISQSYIDWQEEDQSLLI 84
DNY+ WK + K F I+GT P P D S Y W++ + ++
Sbjct: 40 DNYVAWKIRFRSFLRVTKKFGFIDGTLPKP-----------DPFSPLYQPWEQCNAMVMY 88
Query: 85 WLNSTLSESVIPYVIGVNSARDLWLTLEENFSSSSTAHVLQLQNKLREISKGNLSISEYL 144
WL +++++ ++ V+ +A +W L F + QL+ +L + +G S+ EY
Sbjct: 89 WLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYF 148
Query: 145 GSIKKITDNLA------------------AAGSPASKNEIIITMLRGLP--SDYDAFAAA 184
G + K+ L+ A + E L GL ++A
Sbjct: 149 GKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTK 208
Query: 185 IRVRIPPVSIHELHNLLVTEEVTL 208
I + PP S+HE ++ E +
Sbjct: 209 IMFQKPPPSLHEAFAMVKDAESMM 232
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 431 VVKELVSQRMLFQGPAENGLYPMPLLVSSSSSATALLTTATTPIMWHKRLGHPSFQSLQK 490
V+K L R + +G + LY + V + S A T +WH RL H S + ++
Sbjct: 28 VLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETR-LWHSRLAHMSQRGMEL 86
Query: 491 L-KQTLPFSVSCNKPIFCEECQLGRSKKLPFSISQTQTTRPFELLHLDIWGPTNEP 545
L K+ S + FCE+C G++ ++ FS Q T P + +H D+WG + P
Sbjct: 87 LVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142